+
Open data
-
Basic information
Entry | Database: PDB / ID: 1dd2 | ||||||
---|---|---|---|---|---|---|---|
Title | BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) | ||||||
![]() | TRANSCARBOXYLASE 1.3S SUBUNIT | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
Model type details | minimized average | ||||||
![]() | Reddy, D.V. / Shenoy, B.C. / Carey, P.R. / Sonnichsen, F.D. | ||||||
![]() | ![]() Title: High resolution solution structure of the 1.3S subunit of transcarboxylase from Propionibacterium shermanii. Authors: Reddy, D.V. / Shenoy, B.C. / Carey, P.R. / Sonnichsen, F.D. #1: ![]() Title: Structural Characterization of the entire 1.3S Subunit of Transcarboxylase from Propionibacterium shermanii Authors: Reddy, D.V. / Rothemund, S. / Shenoy, B.C. / Carey, P.R. / Sonnichsen, F.D. #2: ![]() Title: Absence of Observable Biotin-Protein Interactions in the 1.3S Subunit of Transcarboxylase: An NMR Study Authors: Reddy, D.V. / Shenoy, B.C. / Carey, P.R. / Sonnichsen, F.D. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 691.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 582.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein | Mass: 7822.057 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Species: Propionibacterium freudenreichii ![]() ![]() ![]() ![]() References: UniProt: P02904, ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
| ||||||||||||||||||||||||
NMR details | Text: BIOTIN ATTACHED TO LYS 89 WAS OMITTED FROM COORDINATES. RESIDUES 1-46 APPEARED UNSTRUCTURED, OMITTED FROM CALCULATIONS AND COORDINATES. |
-
Sample preparation
Details |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
Sample conditions | Ionic strength: 0 / pH: 6.7 / Pressure: 1 atm / Temperature: 20 K | ||||||||
Crystal grow![]() | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
|
---|
-
Processing
NMR software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: DISTANCE GEOMETRY, SIMULATED ANNEALING HYBRID METHOD Software ordinal: 1 Details: DG_SUB_EMBED, DGSA, REFINE WITH DIRECT J-REFINEMENT | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with acceptable covalent geometry Conformers calculated total number: 50 / Conformers submitted total number: 32 |