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Yorodumi- PDB-1cot: X-RAY STRUCTURE OF THE CYTOCHROME C2 ISOLATED FROM PARACOCCUS DEN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cot | |||||||||
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Title | X-RAY STRUCTURE OF THE CYTOCHROME C2 ISOLATED FROM PARACOCCUS DENITRIFICANS REFINED TO 1.7 ANGSTROMS RESOLUTION | |||||||||
Components | CYTOCHROME C2 | |||||||||
Keywords | ELECTRON TRANSPORT | |||||||||
Function / homology | Function and homology information | |||||||||
Biological species | Paracoccus denitrificans (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.7 Å | |||||||||
Authors | Benning, M.M. / Meyer, T.E. / Holden, H.M. | |||||||||
Citation | Journal: Arch.Biochem.Biophys. / Year: 1994 Title: X-Ray structure of the cytochrome c2 isolated from Paracoccus denitrificans refined to 1.7-A resolution. Authors: Benning, M.M. / Meyer, T.E. / Holden, H.M. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cot.cif.gz | 34.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cot.ent.gz | 26.1 KB | Display | PDB format |
PDBx/mmJSON format | 1cot.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/co/1cot ftp://data.pdbj.org/pub/pdb/validation_reports/co/1cot | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 13842.557 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Paracoccus denitrificans (bacteria) / References: UniProt: P00096 |
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#2: Chemical | ChemComp-HEC / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.96 Å3/Da / Density % sol: 37.24 % | |||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion, hanging drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.7 Å / Num. obs: 12199 / % possible obs: 97 % / Num. measured all: 37878 / Rmerge(I) obs: 0.038 |
Reflection shell | *PLUS Highest resolution: 1.7 Å / Lowest resolution: 1.81 Å / % possible obs: 92 % / Num. unique obs: 2078 / Num. measured obs: 3405 / Rmerge(I) obs: 0.094 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.7→30 Å /
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Refinement step | Cycle: LAST / Resolution: 1.7→30 Å
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Refine LS restraints |
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Software | *PLUS Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.175 | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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