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- PDB-1cop: THREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN ... -

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Basic information

Entry
Database: PDB / ID: 1cop
TitleTHREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN SOLUTION AS DETERMINED BY HETERONUCLEAR MULTIDIMENSIONAL NMR
ComponentsCRO REPRESSOR
KeywordsGENE REGULATING PROTEIN
Function / homology
Function and homology information


latency-replication decision / release from viral latency / negative regulation of transcription by competitive promoter binding / negative regulation of viral transcription / core promoter sequence-specific DNA binding / response to UV / protein homodimerization activity / DNA binding
Similarity search - Function
CRO Repressor / Regulatory protein cro superfamily / Cro / Regulatory protein cro / CRO Repressor / Lambda repressor-like, DNA-binding domain superfamily / 2-Layer Sandwich / Alpha Beta
Similarity search - Domain/homology
Regulatory protein cro
Similarity search - Component
Biological speciesEnterobacteria phage lambda (virus)
MethodSOLUTION NMR
AuthorsMatsuo, H. / Shirakawa, M. / Kyogoku, Y.
CitationJournal: J.Mol.Biol. / Year: 1995
Title: Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR.
Authors: Matsuo, H. / Shirakawa, M. / Kyogoku, Y.
History
DepositionJun 23, 1995Processing site: BNL
Revision 1.0Oct 15, 1995Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 16, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
D: CRO REPRESSOR
E: CRO REPRESSOR


Theoretical massNumber of molelcules
Total (without water)14,7512
Polymers14,7512
Non-polymers00
Water0
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Atom site foot note1: CIS PROLINE - PRO D 59 MODEL 1 / 2: CIS PROLINE - PRO E 59 MODEL 1 / 3: CIS PROLINE - PRO D 59 MODEL 2 / 4: CIS PROLINE - PRO E 59 MODEL 2 / 5: CIS PROLINE - PRO D 59 MODEL 3 / 6: CIS PROLINE - PRO E 59 MODEL 3 / 7: CIS PROLINE - PRO D 59 MODEL 4 / 8: CIS PROLINE - PRO E 59 MODEL 4 / 9: CIS PROLINE - PRO D 59 MODEL 5 / 10: CIS PROLINE - PRO E 59 MODEL 5 / 11: CIS PROLINE - PRO D 59 MODEL 6 / 12: CIS PROLINE - PRO E 59 MODEL 6 / 13: CIS PROLINE - PRO D 59 MODEL 7 / 14: CIS PROLINE - PRO E 59 MODEL 7 / 15: CIS PROLINE - PRO D 59 MODEL 8 / 16: CIS PROLINE - PRO E 59 MODEL 8 / 17: CIS PROLINE - PRO D 59 MODEL 9 / 18: CIS PROLINE - PRO E 59 MODEL 9 / 19: CIS PROLINE - PRO D 59 MODEL 10 / 20: CIS PROLINE - PRO E 59 MODEL 10 / 21: CIS PROLINE - PRO D 59 MODEL 11 / 22: CIS PROLINE - PRO E 59 MODEL 11 / 23: CIS PROLINE - PRO D 59 MODEL 12 / 24: CIS PROLINE - PRO E 59 MODEL 12 / 25: CIS PROLINE - PRO D 59 MODEL 13 / 26: CIS PROLINE - PRO E 59 MODEL 13 / 27: CIS PROLINE - PRO D 59 MODEL 14 / 28: CIS PROLINE - PRO E 59 MODEL 14 / 29: CIS PROLINE - PRO D 59 MODEL 15 / 30: CIS PROLINE - PRO E 59 MODEL 15 / 31: CIS PROLINE - PRO D 59 MODEL 16 / 32: CIS PROLINE - PRO E 59 MODEL 16 / 33: CIS PROLINE - PRO D 59 MODEL 17 / 34: CIS PROLINE - PRO E 59 MODEL 17 / 35: CIS PROLINE - PRO D 59 MODEL 18 / 36: CIS PROLINE - PRO E 59 MODEL 18 / 37: CIS PROLINE - PRO D 59 MODEL 19 / 38: CIS PROLINE - PRO E 59 MODEL 19 / 39: CIS PROLINE - PRO D 59 MODEL 20 / 40: CIS PROLINE - PRO E 59 MODEL 20
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / -
Representative

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Components

#1: Protein CRO REPRESSOR


Mass: 7375.484 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Enterobacteria phage lambda (virus) / Genus: Lambda-like viruses / Gene: CRO / Plasmid: PKH1500 / Gene (production host): CRO / Production host: Escherichia coli (E. coli) / Strain (production host): TG1 / References: UniProt: P03040

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameVersionClassification
X-PLOR3.1model building
X-PLOR3.1refinement
X-PLOR3.1phasing
NMR softwareName: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 20

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