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Yorodumi- PDB-1ccf: How an Epidermal Growth Factor (EGF)-Like Domain Binds Calcium-Hi... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ccf | ||||||||||||
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Title | How an Epidermal Growth Factor (EGF)-Like Domain Binds Calcium-High Resolution NMR Structure of the Calcium Form of the NH2-Terminal EGF-Like Domain in Coagulation Factor X | ||||||||||||
Components | COAGULATION FACTOR XFactor X | ||||||||||||
Keywords | COAGULATION FACTOR | ||||||||||||
Function / homology | Function and homology information coagulation factor Xa / blood coagulation / serine-type endopeptidase activity / calcium ion binding / proteolysis / extracellular space Similarity search - Function | ||||||||||||
Biological species | Bos taurus (cattle) | ||||||||||||
Method | SOLUTION NMR | ||||||||||||
Authors | Selander-Sunnerhagen, M. / Ullner, M. / Persson, M. / Teleman, O. / Stenflo, J. / Drakenberg, T. | ||||||||||||
Citation | Journal: J.Biol.Chem. / Year: 1992 Title: How an epidermal growth factor (EGF)-like domain binds calcium. High resolution NMR structure of the calcium form of the NH2-terminal EGF-like domain in coagulation factor X. Authors: Selander-Sunnerhagen, M. / Ullner, M. / Persson, E. / Teleman, O. / Stenflo, J. / Drakenberg, T. #1: Journal: Biochemistry / Year: 1992 Title: Three-Dimensional Structure of the Apo Form of the N-Terminal Egf-Like Module of Blood Coagulation Factor X as Determined by NMR Spectroscopy and Simulated Folding Authors: Ullner, M. / Selander, M. / Persson, E. / Stenflo, J. / Teleman, O. / Drakenberg, T. #2: Journal: Biochemistry / Year: 1990 Title: 1H NMR Assignment and Secondary Structure of the Ca2+-Free Form of the Amino-Terminal Epidermal Growth Factor Like Domain in Coagulation Factor X Authors: Selander, M. / Persson, E. / Stenflo, J. / Drakenberg, T. #3: Journal: J.Biol.Chem. / Year: 1989 Title: Calcium Binding to the Isolated Beta-Hydroxyaspartic Acid-Containing Epidermal Growth Factor-Like Domain of the Bovine Factor X Authors: Selander, M. / Persson, E. / Drakenberg, T. / Linse, S. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ccf.cif.gz | 180.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ccf.ent.gz | 147.6 KB | Display | PDB format |
PDBx/mmJSON format | 1ccf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cc/1ccf ftp://data.pdbj.org/pub/pdb/validation_reports/cc/1ccf | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Atom site foot note | 1: THE HYDROXYLATED ASPARTIC ACID RESIDUE IS REPRESENTED AS ASP 63 AND HETATM HYD 63. 2: PHE 83 - SER 84 MODEL 3 OMEGA =216.47 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 3: SER 84 - THR 85 MODEL 3 OMEGA =148.06 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 4: PHE 83 - SER 84 MODEL 4 OMEGA =213.40 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: SER 84 - THR 85 MODEL 4 OMEGA =148.79 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 6: SER 84 - THR 85 MODEL 5 OMEGA =211.34 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 7: PHE 83 - SER 84 MODEL 9 OMEGA =214.90 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 8: SER 84 - THR 85 MODEL 9 OMEGA =147.72 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION | |||||||||
NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4576.948 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / References: UniProt: P00743 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR ensemble | Conformers submitted total number: 15 |
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