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Yorodumi- PDB-1c20: SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN FROM THE DEAD RINGER... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1c20 | ||||||
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Title | SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN FROM THE DEAD RINGER PROTEIN | ||||||
Components | DEAD RINGER PROTEIN | ||||||
Keywords | DNA BINDING PROTEIN / DNA-BINDING DOMAIN / ARID / AT-RICH INTERACTION DOMAIN / DNA-BINDING PROTEIN | ||||||
Function / homology | Function and homology information regulation of female receptivity / salivary gland development / male courtship behavior / embryonic pattern specification / gliogenesis / dendrite morphogenesis / muscle organ development / anterior/posterior pattern specification / oogenesis / axon guidance ...regulation of female receptivity / salivary gland development / male courtship behavior / embryonic pattern specification / gliogenesis / dendrite morphogenesis / muscle organ development / anterior/posterior pattern specification / oogenesis / axon guidance / DNA-binding transcription factor binding / transcription cis-regulatory region binding / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / DNA binding / nucleus Similarity search - Function | ||||||
Biological species | Drosophila melanogaster (fruit fly) | ||||||
Method | SOLUTION NMR / SEE PRIMARY REFERENCE | ||||||
Model type details | minimized average | ||||||
Authors | Iwahara, J. / Clubb, R.T. | ||||||
Citation | Journal: EMBO J. / Year: 1999 Title: Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID). Authors: Iwahara, J. / Clubb, R.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1c20.cif.gz | 867.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1c20.ent.gz | 731.3 KB | Display | PDB format |
PDBx/mmJSON format | 1c20.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1c20_validation.pdf.gz | 347.4 KB | Display | wwPDB validaton report |
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Full document | 1c20_full_validation.pdf.gz | 505.8 KB | Display | |
Data in XML | 1c20_validation.xml.gz | 52.4 KB | Display | |
Data in CIF | 1c20_validation.cif.gz | 75 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/c2/1c20 ftp://data.pdbj.org/pub/pdb/validation_reports/c2/1c20 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 14983.271 Da / Num. of mol.: 1 / Fragment: DNA-BINDING DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) Drosophila melanogaster (fruit fly) Description: THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER Plasmid: PGEX-4T-1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q24573 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: SEE PRIMARY REFERENCE |
NMR details | Text: SEE PRIMARY REFERENCE |
-Sample preparation
Details |
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Sample conditions | Ionic strength: 0.1 / pH: 6.7 / Pressure: AMBIENT / Temperature: 303 K | ||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: SEE PRIMARY REFERENCE / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: STRUCTURES WITH ACCEPTABLE COVALENT GEOMETRY, WITH FAVORABLE NON-BOND ENERGY, AND WITH THE LEAST RESTRAINT VIOLATIONS. Conformers calculated total number: 100 / Conformers submitted total number: 21 |