+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1bwx | ||||||
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タイトル | THE SOLUTION STRUCTURE OF HUMAN PARATHYROID HORMONE FRAGMENT 1-39, NMR, 10 STRUCTURES | ||||||
要素 | PARATHYROID HORMONEパラトルモン | ||||||
キーワード | PEPTIDE HORMONE (ペプチドホルモン) / SOLUTION STRUCTURE / HUMAN PARATHYROID HORMONE (パラトルモン) | ||||||
機能・相同性 | 機能・相同性情報 type 1 parathyroid hormone receptor binding / parathyroid hormone receptor binding / negative regulation of bone mineralization involved in bone maturation / positive regulation of osteoclast proliferation / negative regulation of apoptotic process in bone marrow cell / hormone-mediated apoptotic signaling pathway / response to parathyroid hormone / positive regulation of cell proliferation in bone marrow / magnesium ion homeostasis / positive regulation of signal transduction ...type 1 parathyroid hormone receptor binding / parathyroid hormone receptor binding / negative regulation of bone mineralization involved in bone maturation / positive regulation of osteoclast proliferation / negative regulation of apoptotic process in bone marrow cell / hormone-mediated apoptotic signaling pathway / response to parathyroid hormone / positive regulation of cell proliferation in bone marrow / magnesium ion homeostasis / positive regulation of signal transduction / macromolecule biosynthetic process / response to fibroblast growth factor / phosphate ion homeostasis / cAMP metabolic process / response to vitamin D / negative regulation of chondrocyte differentiation / Class B/2 (Secretin family receptors) / positive regulation of inositol phosphate biosynthetic process / peptide hormone receptor binding / bone mineralization / Rho protein signal transduction / : / positive regulation of glycogen biosynthetic process / positive regulation of bone mineralization / response to cadmium ion / bone resorption / homeostasis of number of cells within a tissue / skeletal system development / positive regulation of glucose import / response to lead ion / adenylate cyclase-activating G protein-coupled receptor signaling pathway / hormone activity / intracellular calcium ion homeostasis / cell-cell signaling / G alpha (s) signalling events / 遺伝子発現の調節 / response to ethanol / transcription by RNA polymerase II / receptor ligand activity / response to xenobiotic stimulus / G protein-coupled receptor signaling pathway / negative regulation of gene expression / positive regulation of gene expression / positive regulation of transcription by RNA polymerase II / extracellular space / extracellular region 類似検索 - 分子機能 | ||||||
生物種 | Homo sapiens (ヒト) | ||||||
手法 | 溶液NMR / SIMULATED ANNEALING, RESTRAINED MOLECULAR DYNAMICS | ||||||
データ登録者 | Marx, U.C. / Roesch, P. / Adermann, K. / Bayer, P. / Forssmann, W.-G. | ||||||
引用 | ジャーナル: Biochem.Biophys.Res.Commun. / 年: 2000 タイトル: Solution structures of human parathyroid hormone fragments hPTH(1-34) and hPTH(1-39) and bovine parathyroid hormone fragment bPTH(1-37). 著者: Marx, U.C. / Adermann, K. / Bayer, P. / Forssmann, W.G. / Rosch, P. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1bwx.cif.gz | 132.5 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1bwx.ent.gz | 107 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1bwx.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/bw/1bwx ftp://data.pdbj.org/pub/pdb/validation_reports/bw/1bwx | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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NMR アンサンブル |
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-要素
#1: タンパク質・ペプチド | 分子量: 4537.273 Da / 分子数: 1 / 断片: RESIDUES 1-39 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 参照: UniProt: P01270 |
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-実験情報
-実験
実験 | 手法: 溶液NMR | ||||||||||||||||
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NMR実験 |
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NMR実験の詳細 | Text: THE DISTANCE RESTRAINTS USED FOR STRUCTURE CALCULATION WERE OBTAINED FROM TWO-DIMENSIONAL HOMONUCLEAR 1H- NOESY SPECTRA. |
-試料調製
詳細 | 内容: 10% D2O/90% H2O |
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試料状態 | イオン強度: 320 mM / pH: 5.8 / 圧: 1 atm / 温度: 298 K |
結晶化 | *PLUS 手法: その他 / 詳細: NMR |
-NMR測定
NMRスペクトロメーター | タイプ: Bruker AMX600 / 製造業者: Bruker / モデル: AMX600 / 磁場強度: 600 MHz |
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-解析
ソフトウェア |
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NMR software |
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精密化 | 手法: SIMULATED ANNEALING, RESTRAINED MOLECULAR DYNAMICS / ソフトェア番号: 1 詳細: THE STRUCTURE CALCULATION FOLLOWED STANDARD PROCEDURES EMPLOYING A HYBRID DISTANCE GEOMETRY MOLECULAR DYNAMICS APPROACH WITH SIMULATED ANNEALING REFINEMENT AND SUBSEQUENT ENERGY MINIMIZATION. ...詳細: THE STRUCTURE CALCULATION FOLLOWED STANDARD PROCEDURES EMPLOYING A HYBRID DISTANCE GEOMETRY MOLECULAR DYNAMICS APPROACH WITH SIMULATED ANNEALING REFINEMENT AND SUBSEQUENT ENERGY MINIMIZATION. FOR THE REFINEMENT THE DIELECTRIC CONSTANT WAS CHANGED TO 4. STRUCTURE PARAMETERS WERE EXTRACTED FROM THE STANDARD FILES PARALLHDG.PRO AND TOPALLHDG.PRO OF X-PLOR 3.1. IN EACH ROUND OF THE STRUCTURE CALCULATION 30 STRUCTURES WERE CALCULATED. OF THE 30 STRUCTURES RESULTING FROM THE FINAL ROUND OF STRUCTURE CALCULATION, THOSE 10 STRUCTURES THAT SHOWED THE LOWEST TOTAL ENERGY VALUES WERE SELECTED FOR FURTHER CHARACTERIZATION. | ||||||||||||||||
NMRアンサンブル | コンフォーマー選択の基準: ENERGY, AGREEMENT WITH EXPERIMENTAL DATA 計算したコンフォーマーの数: 30 / 登録したコンフォーマーの数: 10 |