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Yorodumi- EMDB-8944: 20S supercomplex consisting of linked neuronal SNARE complex, alp... -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-8944 | |||||||||
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Title | 20S supercomplex consisting of linked neuronal SNARE complex, alpha-SNAP, and N-ethylmaleimide sensitive factor (NSF) | |||||||||
Map data | 20S supercomplex with linked SNARE | |||||||||
Sample |
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Method | single particle reconstruction / cryo EM / Resolution: 7.0 Å | |||||||||
Authors | Zhao M / Choi UB / Brunger AT | |||||||||
Funding support | United States, 1 items
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Citation | Journal: Elife / Year: 2018 Title: NSF-mediated disassembly of on- and off-pathway SNARE complexes and inhibition by complexin. Authors: Ucheor B Choi / Minglei Zhao / K Ian White / Richard A Pfuetzner / Luis Esquivies / Qiangjun Zhou / Axel T Brunger / Abstract: SNARE complex disassembly by the ATPase NSF is essential for neurotransmitter release and other membrane trafficking processes. We developed a single-molecule FRET assay to monitor repeated rounds of ...SNARE complex disassembly by the ATPase NSF is essential for neurotransmitter release and other membrane trafficking processes. We developed a single-molecule FRET assay to monitor repeated rounds of NSF-mediated disassembly and reassembly of individual SNARE complexes. For ternary neuronal SNARE complexes, disassembly proceeds in a single step within 100 msec. We observed short- (<0.32 s) and long-lived (≥0.32 s) disassembled states. The long-lived states represent fully disassembled SNARE complex, while the short-lived states correspond to failed disassembly or immediate reassembly. Either high ionic strength or decreased αSNAP concentration reduces the disassembly rate while increasing the frequency of short-lived states. NSF is also capable of disassembling anti-parallel ternary SNARE complexes, implicating it in quality control. Finally, complexin-1 competes with αSNAP binding to the SNARE complex; addition of complexin-1 has an effect similar to that of decreasing the αSNAP concentration, possibly differentially regulating cis and trans SNARE complexes disassembly. | |||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_8944.map.gz | 9.7 MB | EMDB map data format | |
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Header (meta data) | emd-8944-v30.xml emd-8944.xml | 11.8 KB 11.8 KB | Display Display | EMDB header |
Images | emd_8944.png | 41.1 KB | ||
Others | emd_8944_additional.map.gz | 12.1 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-8944 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-8944 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_8944.map.gz / Format: CCP4 / Size: 12.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | 20S supercomplex with linked SNARE | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 2.02 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Additional map: Sharpened map of 20S supercomplex with linked SNARE
File | emd_8944_additional.map | ||||||||||||
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Annotation | Sharpened map of 20S supercomplex with linked SNARE | ||||||||||||
Projections & Slices |
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Density Histograms |
-Sample components
-Entire : 20S Supercomplex with linked SNARE complex
Entire | Name: 20S Supercomplex with linked SNARE complex |
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Components |
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-Supramolecule #1: 20S Supercomplex with linked SNARE complex
Supramolecule | Name: 20S Supercomplex with linked SNARE complex / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Recombinant expression | Organism: Escherichia coli (E. coli) |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Concentration | 15 mg/mL |
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Buffer | pH: 8 |
Grid | Support film - Material: CARBON / Support film - topology: HOLEY / Details: unspecified |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 293 K / Instrument: FEI VITROBOT MARK III |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Cs: 2.7 mm |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Average electron dose: 78.0 e/Å2 |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
-Image processing
CTF correction | Software - Name: Gctf |
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Startup model | Type of model: PDB ENTRY PDB model - PDB ID: |
Initial angle assignment | Type: MAXIMUM LIKELIHOOD / Software - Name: RELION (ver. 1.3) |
Final angle assignment | Type: MAXIMUM LIKELIHOOD / Software - Name: RELION (ver. 1.3) |
Final reconstruction | Applied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 7.0 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 1.3) / Number images used: 45194 |