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- EMDB-31137: The structure of SWI/SNF-nucleosome complex -

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Basic information

Entry
Database: EMDB / ID: EMD-31137
TitleThe structure of SWI/SNF-nucleosome complex
Map dataThe structure of SWI/SNF-nucleosome complex
Sample
  • Complex: The structure of SWI/SNF chromatin remodeler complex
    • Complex: SWI/SNF
      • Protein or peptide: x 10 types
    • Complex: Histone
      • Protein or peptide: x 4 types
    • Complex: DNA
      • DNA: x 2 types
  • Ligand: x 3 types
Function / homology
Function and homology information


carbon catabolite activation of transcription from RNA polymerase II promoter / positive regulation of cell adhesion involved in single-species biofilm formation / positive regulation of mating type switching / RHO GTPases activate IQGAPs / RHO GTPases Activate WASPs and WAVEs / Regulation of actin dynamics for phagocytic cup formation / positive regulation of invasive growth in response to glucose limitation / HDACs deacetylate histones / aggrephagy / Platelet degranulation ...carbon catabolite activation of transcription from RNA polymerase II promoter / positive regulation of cell adhesion involved in single-species biofilm formation / positive regulation of mating type switching / RHO GTPases activate IQGAPs / RHO GTPases Activate WASPs and WAVEs / Regulation of actin dynamics for phagocytic cup formation / positive regulation of invasive growth in response to glucose limitation / HDACs deacetylate histones / aggrephagy / Platelet degranulation / DNA strand invasion / rDNA binding / : / SUMOylation of chromatin organization proteins / nucleosome disassembly / RSC-type complex / SWI/SNF complex / ATP-dependent chromatin remodeler activity / nucleosomal DNA binding / NuA4 histone acetyltransferase complex / nuclear chromosome / positive regulation of transcription by RNA polymerase I / ATP-dependent activity, acting on DNA / maturation of LSU-rRNA / helicase activity / chromosome segregation / transcription elongation by RNA polymerase II / nucleotide-excision repair / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / double-strand break repair via homologous recombination / lysine-acetylated histone binding / DNA-templated DNA replication / chromatin DNA binding / structural constituent of chromatin / double-strand break repair / nucleosome / chromatin organization / histone binding / RNA polymerase II-specific DNA-binding transcription factor binding / transcription cis-regulatory region binding / hydrolase activity / chromatin remodeling / protein heterodimerization activity / chromatin binding / chromatin / regulation of DNA-templated transcription / regulation of transcription by RNA polymerase II / structural molecule activity / positive regulation of DNA-templated transcription / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / ATP binding / metal ion binding / nucleus / cytosol
Similarity search - Function
Chromatin-remodelling complex, RSC SWI/SNF subunit Rsc7/Swp82 / Chromatin remodelling complex Rsc7/Swp82 subunit / Transcription regulator protein Rtt102 / Rtt102p-like transcription regulator protein / SMARCC, C-terminal / SWIRM-associated region 1 / SNF5/SMARCB1/INI1 / SNF5 / SMARCB1 / INI1 / Glutamine-Leucine-Glutamine, QLQ / QLQ ...Chromatin-remodelling complex, RSC SWI/SNF subunit Rsc7/Swp82 / Chromatin remodelling complex Rsc7/Swp82 subunit / Transcription regulator protein Rtt102 / Rtt102p-like transcription regulator protein / SMARCC, C-terminal / SWIRM-associated region 1 / SNF5/SMARCB1/INI1 / SNF5 / SMARCB1 / INI1 / Glutamine-Leucine-Glutamine, QLQ / QLQ / QLQ domain profile. / QLQ / Snf2, ATP coupling domain / Snf2-ATP coupling, chromatin remodelling complex / Snf2-ATP coupling, chromatin remodelling complex / DNA binding domain with preference for A/T rich regions / Helicase/SANT-associated domain / HSA domain profile. / AT hook, DNA-binding motif / ARID/BRIGHT DNA binding domain / SWIRM domain / SWIRM domain / SWIRM domain profile. / ARID DNA-binding domain / ARID DNA-binding domain superfamily / ARID/BRIGHT DNA binding domain / ARID domain profile. / BRIGHT, ARID (A/T-rich interaction domain) domain / SANT domain profile. / SWIB/MDM2 domain superfamily / SANT domain / : / SNF2-like, N-terminal domain superfamily / SNF2, N-terminal / SNF2-related domain / Myb-like DNA-binding domain / SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains / SANT/Myb domain / Actin / Actin family / Actin / Histone H2B signature. / Histone H2B / Histone H2B / Histone H2A conserved site / Histone H2A signature. / Histone H2A, C-terminal domain / C-terminus of histone H2A / Histone H2A / Histone 2A / Histone H4, conserved site / Histone H4 signature. / Histone H4 / Histone H4 / CENP-T/Histone H4, histone fold / Centromere kinetochore component CENP-T histone fold / TATA box binding protein associated factor / TATA box binding protein associated factor (TAF), histone-like fold domain / Helicase conserved C-terminal domain / Histone H3 signature 1. / Histone H3 signature 2. / Histone H3 / Histone H3/CENP-A / Homeobox-like domain superfamily / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / ATPase, nucleotide binding domain / Histone-fold / Bromodomain, conserved site / Bromodomain signature. / Bromodomain / Bromodomain profile. / bromo domain / helicase superfamily c-terminal domain / Bromodomain / Bromodomain-like superfamily / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal / Helicase superfamily 1/2, ATP-binding domain / Winged helix-like DNA-binding domain superfamily / P-loop containing nucleoside triphosphate hydrolase
Similarity search - Domain/homology
Histone H2B 1.1 / SWI/SNF chromatin-remodeling complex subunit SWI1 / SWI/SNF chromatin-remodeling complex subunit SNF5 / Transcription regulatory protein SNF6 / Transcription regulatory protein SNF2 / SWI/SNF complex subunit SWI3 / SWI/SNF global transcription activator complex subunit SWP82 / Regulator of Ty1 transposition protein 102 / Transcription regulatory protein SNF12 / Histone H4 ...Histone H2B 1.1 / SWI/SNF chromatin-remodeling complex subunit SWI1 / SWI/SNF chromatin-remodeling complex subunit SNF5 / Transcription regulatory protein SNF6 / Transcription regulatory protein SNF2 / SWI/SNF complex subunit SWI3 / SWI/SNF global transcription activator complex subunit SWP82 / Regulator of Ty1 transposition protein 102 / Transcription regulatory protein SNF12 / Histone H4 / Histone H3.2 / Actin-like protein ARP9 / Actin-related protein 7 / Histone H2A
Similarity search - Component
Biological speciesSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast) / Xenopus laevis (African clawed frog) / synthetic construct (others)
Methodsingle particle reconstruction / cryo EM / Resolution: 6.9 Å
AuthorsChen ZC / Chen KJ / He ZY / Ye YP
CitationJournal: Cell Discov / Year: 2021
Title: Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity.
Authors: Zhenyu He / Kangjing Chen / Youpi Ye / Zhucheng Chen /
History
DepositionMar 24, 2021-
Header (metadata) releaseJan 12, 2022-
Map releaseJan 12, 2022-
UpdateJan 12, 2022-
Current statusJan 12, 2022Processing site: PDBj / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.023
  • Imaged by UCSF Chimera
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  • Surface view colored by radius
  • Surface level: 0.023
  • Imaged by UCSF Chimera
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  • Surface view with fitted model
  • Atomic models: PDB-7egp
  • Surface level: 0.023
  • Imaged by UCSF Chimera
  • Download
Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_31137.png

Downloads & links

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Map

FileDownload / File: emd_31137.map.gz / Format: CCP4 / Size: 30.5 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationThe structure of SWI/SNF-nucleosome complex
Voxel sizeX=Y=Z: 2.1484 Å
Density
Contour LevelBy AUTHOR: 0.023 / Movie #1: 0.023
Minimum - Maximum-0.011665107 - 0.093645476
Average (Standard dev.)0.000613788 (±0.004005623)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions200200200
Spacing200200200
CellA=B=C: 429.68002 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z2.14842.14842.1484
M x/y/z200200200
origin x/y/z0.0000.0000.000
length x/y/z429.680429.680429.680
α/β/γ90.00090.00090.000
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS200200200
D min/max/mean-0.0120.0940.001

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Supplemental data

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Sample components

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Entire : The structure of SWI/SNF chromatin remodeler complex

EntireName: The structure of SWI/SNF chromatin remodeler complex
Components
  • Complex: The structure of SWI/SNF chromatin remodeler complex
    • Complex: SWI/SNF
      • Protein or peptide: SWI/SNF chromatin-remodeling complex subunit SWI1
      • Protein or peptide: SWI/SNF chromatin-remodeling complex subunit SNF5
      • Protein or peptide: SWI/SNF complex subunit SWI3
      • Protein or peptide: Transcription regulatory protein SNF12
      • Protein or peptide: Transcription regulatory protein SNF6
      • Protein or peptide: SWI/SNF global transcription activator complex subunit SWP82
      • Protein or peptide: Transcription regulatory protein SNF2
      • Protein or peptide: Regulator of Ty1 transposition protein 102
      • Protein or peptide: Actin-related protein 7
      • Protein or peptide: Actin-like protein ARP9
    • Complex: Histone
      • Protein or peptide: Histone H3.2
      • Protein or peptide: Histone H4
      • Protein or peptide: Histone H2A
      • Protein or peptide: Histone H2B 1.1
    • Complex: DNA
      • DNA: DNA (239-MER)
      • DNA: DNA (239-MER)
  • Ligand: ADENOSINE-5'-DIPHOSPHATE
  • Ligand: BERYLLIUM TRIFLUORIDE ION
  • Ligand: MAGNESIUM ION

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Supramolecule #1: The structure of SWI/SNF chromatin remodeler complex

SupramoleculeName: The structure of SWI/SNF chromatin remodeler complex / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#16

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Supramolecule #2: SWI/SNF

SupramoleculeName: SWI/SNF / type: complex / ID: 2 / Parent: 1 / Macromolecule list: #1-#10
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)

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Supramolecule #3: Histone

SupramoleculeName: Histone / type: complex / ID: 3 / Parent: 1 / Macromolecule list: #11-#14
Source (natural)Organism: Xenopus laevis (African clawed frog)
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)

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Supramolecule #4: DNA

SupramoleculeName: DNA / type: complex / ID: 4 / Parent: 1 / Macromolecule list: #15-#16

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Macromolecule #1: SWI/SNF chromatin-remodeling complex subunit SWI1

MacromoleculeName: SWI/SNF chromatin-remodeling complex subunit SWI1 / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 124.885695 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: SNQLISNYAA SNSMDRSSSA SNEFVPNTSD NNNNSNNHNM RNNSNNKTSN NNNVTAVPAA TPANTNNSTS NANTVFSERA AMFAALQQK QQQRFQALQQ QQQQQQNQQQ QNQQPQQQQQ QQQNPKFLQS QRQQQQRSIL QSLNPALQEK ISTELNNKQY E LFMKSLIE ...String:
SNQLISNYAA SNSMDRSSSA SNEFVPNTSD NNNNSNNHNM RNNSNNKTSN NNNVTAVPAA TPANTNNSTS NANTVFSERA AMFAALQQK QQQRFQALQQ QQQQQQNQQQ QNQQPQQQQQ QQQNPKFLQS QRQQQQRSIL QSLNPALQEK ISTELNNKQY E LFMKSLIE NCKKRNMPLQ SIPEIGNRKI NLFYLYMLVQ KFGGADQVTR TQQWSMVAQR LQISDYQQLE SIYFRILLPY ER HMISQEG IKETQAKRIF LQQFLQELLK KVQQQQQAAA LANANNNINS ASSAPTPAAP GASVPATAAP GTEAGIVPVS ANT PKSLNS NININVNNNN IGQQQVKKPR KQRVKKKTKK ELELERKERE DFQKRQQKLL EDQQRQQKLL LETKLRQQYE IELK KLPKV YKRSIVRNYK PLINRLKHYN GYDINYISKI GEKIDSNKPI FLFAPELGAI NLHALSMSLQ SKNLGEINTA LNTLL VTSA DSNLKISLVK YPELLDSLAI LGMNLLSNLS QNVVPYHRNT SDYYYEDAGS NQYYVTQHDK MVDKIFEKVN NNATLT PND SNDEKVTILV DSLTGNQLPT PTPTEMEPDL DTECFISMQS TSPAVKQWDL LPEPIRFLPN QFPLKIHRTP YLTSLKK IK DEIDDPFTKI NTRGAEDPKV LINDQLSTIS MILRNISFSD NNSRIMSRNF YLKRFISDLL WLVLIHPENF TCNRKILN F KKDLVIVLSN ISHLLEIASS IDCLLILILV ISFGQPKLNP MASSSSFGSE SLTFNEFQLQ WGKYQTFGVD ILAKLFSLE KPNLNYFKSI LLNKNTGNNL YDRNSNNNHK DKKLLRRLLN LYNDNNKNNN NRHNLLNDVV SFLFSAIPLQ QVLSQSADPS LLIDQFSPV ISQSLTSILV IVQKILPLSN EVFEISENNS DSNSNNNGNK DSSFNFNKNL PFVWLSSEEN IGSGLLKLSE I ILNINNST SKNTLLQQQN YSKVLLPSIN ISCVQLIKCL VEKSICFENC LNNDPEILKK IASIPNLFPT DLEIFQLFTN PS VDIQIIN QYQLLYNLKN DILTNLEGGS GGWSHPQFEK WSHPQFEKWS HPQFEK

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Macromolecule #2: SWI/SNF chromatin-remodeling complex subunit SNF5

MacromoleculeName: SWI/SNF chromatin-remodeling complex subunit SNF5 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 103.954438 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MNNQPQGTNS VPNSIGNIFS NIGTPSFNMA QIPQQLYQSL TPQQLQMIQQ RHQQLLRSRL QQQQQQQQQT SPPPQTHQSP PPPPQQSQP IANQSATSTP PPPPAPHNLH PQIGQVPLAP APINLPPQIA QLPLATQQQV LNKLRQQAIA KNNPQVVNAI T VAQQQVQR ...String:
MNNQPQGTNS VPNSIGNIFS NIGTPSFNMA QIPQQLYQSL TPQQLQMIQQ RHQQLLRSRL QQQQQQQQQT SPPPQTHQSP PPPPQQSQP IANQSATSTP PPPPAPHNLH PQIGQVPLAP APINLPPQIA QLPLATQQQV LNKLRQQAIA KNNPQVVNAI T VAQQQVQR QIEQQKGQQT AQTQLEQQRQ LLVQQQQQQQ LRNQIQRQQQ QQFRHHVQIQ QQQQKQQQQQ QQHQQQQQQQ QQ QQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QGQIPQSQQV PQVRSMSGQP PTNVQPTIGQ LPQLPKLNLP KYQTIQYDPP ETK LPYPTY WSDKKADTDT LLYEQIIQRD KINKYSLIRE TNGYDPFSIY GFSNKEYISR LWHTLKYYQD LKNTRMKSIT STSQ KIPSA SIWGNGYSGY GNGITNTTTR VIPQVEVGNR KHYLEDKLKV YKQAMNETSE QLVPIRLEFD QDRDRFFLRD TLLWN KNDK LIKIEDFVDD MLRDYRFEDA TREQHIDTIC QSIQEQIQEF QGNPYIELNQ DRLGGDDLRI RIKLDIVVGQ NQLIDQ FEW DISNSDNCPE EFAESMCQEL ELPGEFVTAI AHSIREQVHM YHKSLALLGY NFDGSAIEDD DIRSRMLPTI TLDDVYR PA AESKIFTPNL LQISAAELER LDKDKDRDTR RKRRQGRSNR RGMLALSGTS ASNTSMNGVH NTVAAGNASS LPPGEILL P DIADIPRTFR TPVPSTLMPG GVDVGPSVES YELRNTTTYK SRPDRPKPVS PPCYIIDHIP GHSLLLSIKL PGKVNTKEE FAAAPNDTSS GTNAMLPSPE SLKTKLNSNI RAGVTIPSIP NPIANHTVTN SPNPTLQPVI PGGAASKSVP TPSLPIAPPV APHDSEATL LTNSNNGSSN NNTQNTGGSG GDYKDDDDK

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Macromolecule #3: SWI/SNF complex subunit SWI3

MacromoleculeName: SWI/SNF complex subunit SWI3 / type: protein_or_peptide / ID: 3 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 94.178352 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MENTLGEGST VNASVDVDQH GNDNNSDSNA NAAVAGVANT DTAGEESQQQ DESLKDEATV PNTRDAESEA ITVTAKQQPT MQANKLDSQ ETPSTEESRA QNVFGQDNED SDNLFGETES SVSNNEANTP SIPTNPVDNE NNKPAIKEDS TIQDSNGDVK N MEDVKIQK ...String:
MENTLGEGST VNASVDVDQH GNDNNSDSNA NAAVAGVANT DTAGEESQQQ DESLKDEATV PNTRDAESEA ITVTAKQQPT MQANKLDSQ ETPSTEESRA QNVFGQDNED SDNLFGETES SVSNNEANTP SIPTNPVDNE NNKPAIKEDS TIQDSNGDVK N MEDVKIQK EEEPENNTVI EGVKEESQPD ENTKEMDEVE EDDEDDDQPM ISPDNSIFGD TKSESKQLGN TSSVANTPSE IP DAHKAEQ EDIIEKTESV DKKVDSGEER NEQEREIMND HSKSANPKKT TITRVEPETF EIPQAHEIVI PSYSKWFNLE KIH SIEVQS LPEFFTNRIP SKTPEVYMRY RNFMVNSYRL NPNEYFSVTT ARRNVSGDAA ALFRLHKFLT KWGLINYQVD SKLL PKNIE PPLTSQYSTR HDAPRGLFPF ESYKPSVQLP DMAKLKKMMN TSDSESTLYK YLKESKRKYD EITHPPSTTD DENGD KNDN GGKMNNEVST STSMTGDANL LEEGETSRPL KKVKILEQID ENWSKEDLQK LLKGIQEFGA DWYKVAKNVG NKSPEQ CIL RFLQLPIEDK FLYGDGNGKG DNDNGLGPLK YAPHLPFSKS ENPVLSTIAF LVGLVNPKTV QSMTQRAIQS AESIKSQ KE EISDQKPIEH IKEGSEIAIS SLGYRSHIFA TNEERQMNFL TNELIRLQME KLDAKLNHLK KLEKFMELER KTLERQQE N LLIQRLNFNQ NSSKIVNVLS KCLNLISDSN INNSSVAEKE EIRSQIDHFK SMLSKPETLS IGKNPFNKPN IETGENHNG QSISNENDVK PISIEAPQFY RYWSAGGSGG HHHHHH

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Macromolecule #4: Transcription regulatory protein SNF12

MacromoleculeName: Transcription regulatory protein SNF12 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 63.947633 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MSKVMKPSNG KGSRKSSKAA TPDTKNFFHA KKKDPVNQDK ANNASQITPT VPHSHPSDMV IPDHLAELIP ELYSFQQLVD SEKRLDHFI HLRNLHMKRM VAQWERSKLS QEFLYPHLNF PNVKFLRIFI SNVSENQPWQ MDTNNEADLM ALENATWTMR I EGRLLDNV ...String:
MSKVMKPSNG KGSRKSSKAA TPDTKNFFHA KKKDPVNQDK ANNASQITPT VPHSHPSDMV IPDHLAELIP ELYSFQQLVD SEKRLDHFI HLRNLHMKRM VAQWERSKLS QEFLYPHLNF PNVKFLRIFI SNVSENQPWQ MDTNNEADLM ALENATWTMR I EGRLLDNV QANDPAREKF SSFIESIVVD FKNKENDNVP STKFNAAPEE NATEGPSDKK LNLNLPLQFS LPNGDNSTTT NT DQNNATM GEETAKKDMS STTPKLESVK WQYDPNNPVD FDGLDIKRVG SENVECTISI LRKSSPEEPF MSYSPQLTAI IGL KSGTSH DAIFSIYKYI HLNELLTNDE SAFENLMGNR NNHNSNTSTS KMLDAASSQV SIVKLDTQLI TLLPSSLKES SPDT MKLTD LLSLINSTHL LPLQPIEIDY TVRVDKASTY GELVLDIEVP DVNALKFNNT QRESQIGAAE LNENARELEQ IKPKI ALQD KEITSVLSNL HESNKRYRFF KKISEDPVKA LNECIASTSN ALKVLSGDEG YNEDMVRRAN FYKENEAMLR ENIEVI LSN GRM

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Macromolecule #5: Transcription regulatory protein SNF6

MacromoleculeName: Transcription regulatory protein SNF6 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 37.652582 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MGVIKKKRSH HGKASRQQYY SGVQVGGVGS MGAINNNIPS LTSFAEENNY QYGYSGSSAG MNGRSLTYAQ QQLNKQRQDF ERVRLRPEQ LSNIIHDESD TISFRSNLLK NFISSNDAFN MLSLTTVPCD RIEKSRLFSE KTIRYLMQKQ HEMKTQAAEL Q EKPLTPLK ...String:
MGVIKKKRSH HGKASRQQYY SGVQVGGVGS MGAINNNIPS LTSFAEENNY QYGYSGSSAG MNGRSLTYAQ QQLNKQRQDF ERVRLRPEQ LSNIIHDESD TISFRSNLLK NFISSNDAFN MLSLTTVPCD RIEKSRLFSE KTIRYLMQKQ HEMKTQAAEL Q EKPLTPLK YTKLIAAAED GSRSTKDMID AVFEQDSHLR YQPDGVVVHR DDPALVGKLR GDLREAPADY WTHAYRDVLA QY HEAKERI RQKEVTAGEA QDEASLQQQQ QQDLQQQQQV VTTVASQSPH ATATEKEPVP AVVDDPLENM FGDYSNEPFN TNF DDEFGD LDAVFF

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Macromolecule #6: SWI/SNF global transcription activator complex subunit SWP82

MacromoleculeName: SWI/SNF global transcription activator complex subunit SWP82
type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 71.510805 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MLGEDEGNTV LEKGNNPSVK QGEVGAVFIV PKILIREHER VILKQILQIL DQDELVQPPL DKFPYKKLEL PKYIDELKTR DATNTSYKM IQLDAYGEKK VGSNGELFGG RHYLFNTFTF TAHMGVLLVL LQDVIKVLYQ SNATHDEDEF IVQHDQILVM E TSEEQTKF ...String:
MLGEDEGNTV LEKGNNPSVK QGEVGAVFIV PKILIREHER VILKQILQIL DQDELVQPPL DKFPYKKLEL PKYIDELKTR DATNTSYKM IQLDAYGEKK VGSNGELFGG RHYLFNTFTF TAHMGVLLVL LQDVIKVLYQ SNATHDEDEF IVQHDQILVM E TSEEQTKF LAKNGVIPEE SKGSFKYITA RSAFVEFGAS VIAGGQRIVD DYWESLAKKQ NLSSHQRVFK LSTNLISKIS LL RPSFQNN RISNANEISA NTNNTCTIST SKFESQYPIV TEQPSAEIRE AYIENFAKGE HISAIVPGQS ISGTLELSAQ FRV PRYHSK NSFQQALQMK AMDIPIGRHE ELLAQYESQA PDGSASISLP NHIPSVNPSN KPIKRMLSSI LDINVSSSKN KKSE ENEMI KPMNKGQHKN NTSLNINGWK FESLPLKSAE NSGKQQYYRG LPLYEKNTLL ERLKQLTPNE IKELEHLHDA VFVNT GLQN VRKVRTKKWK KYWQYKAGIP IGLKRSQLDE FKNKYLKDVL AQTSVTTNFN EITNTDETIT TKRVPNPNFL GNCNIK DFK PPYIYSHVNK VPQNVAGDKT AVKLDTEVKN TNANPVVATD PVAAKPDNLA NFSNEVAMNN GGSGGHHHHH H

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Macromolecule #7: Transcription regulatory protein SNF2

MacromoleculeName: Transcription regulatory protein SNF2 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
EC number: Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 114.311914 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: LQDQYKEGIK VVDIDDPDMM VDSFTMPNIS HSNIDYQTLL ANSDHAKFTI EPGVLPVGID THTATDIYQT LIALNLDTTV NDCLDKLLN DECTESTREN ALYDYYALQL LPLQKAVRGH VLQFEWHQNS LLTNTHPNFL SKIRNINVQD ALLTNQLYKN H ELLKLERK ...String:
LQDQYKEGIK VVDIDDPDMM VDSFTMPNIS HSNIDYQTLL ANSDHAKFTI EPGVLPVGID THTATDIYQT LIALNLDTTV NDCLDKLLN DECTESTREN ALYDYYALQL LPLQKAVRGH VLQFEWHQNS LLTNTHPNFL SKIRNINVQD ALLTNQLYKN H ELLKLERK KTEAVARLKS MNKSAINQYN RRQDKKNKRL KFGHRLIATH TNLERDEQKR AEKKAKERLQ ALKANDEEAY IK LLDQTKD TRITHLLRQT NAFLDSLTRA VKDQQKYTKE MIDSHIKEAS EEVDDLSMVP KMKDEEYDDD DDNSNVDYYN VAH RIKEDI KKQPSILVGG TLKDYQIKGL QWMVSLFNNH LNGILADEMG LGKTIQTISL LTYLYEMKNI RGPYLVIVPL STLS NWSSE FAKWAPTLRT ISFKGSPNER KAKQAKIRAG EFDVVLTTFE YIIKERALLS KVKWVHMIID EGHRMKNAQS KLSLT LNTH YHADYRLILT GTPLQNNLPE LWALLNFVLP KIFNSVKSFD EWFNTPFANT GGQDKIELSE EETLLVIRRL HKVLRP FLL RRLKKDVEKE LPDKVEKVVK CKMSALQQIM YQQMLKYRRL FIGDQNNKKM VGLRGFNNQI MQLKKICNHP FVFEEVE DQ INPTRETNDD IWRVAGKFEL LDRILPKLKA TGHRVLIFFQ MTQIMDIMED FLRYINIKYL RLDGHTKSDE RSELLRLF N APDSEYLCFI LSTRAGGLGL NLQTADTVII FDTDWNPHQD LQAQDRAHRI GQKNEVRILR LITTNSVEEV ILERAYKKL DIDGKVIQAG KFDNKSTSEE QEALLRSLLD AEEERRKKRE SGVEEEEELK DSEINEILAR NDEEMAVLTR MDEDRSKKEE ELGVKSRLL EKSELPDIYS RDIGAELKRE ESESAAVYNG RGARERKTAT YNDNMSEEQW LRQFEVSDDE KNDKQARKQR T KKEDKSEA IDGGGSGGHH HHHH

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Macromolecule #8: Regulator of Ty1 transposition protein 102

MacromoleculeName: Regulator of Ty1 transposition protein 102 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 17.817615 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString:
MDPQTLITKA NKVSYYGNPT SKESWRYDWY QPSKVSSNVQ QPQQQLGDME NNLEKYPFRY KTWLRNQEDE KNLQRESCED ILDLKEFDR RILKKSLMTS HTKGDTSKAT GAPSANQGDE ALSVDDIRGA VGNSEAIPGL SAGVNNDNTK ESKDVKMN

+
Macromolecule #9: Actin-related protein 7

MacromoleculeName: Actin-related protein 7 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 53.863016 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MTLNRKCVVI HNGSHRTVAG FSNVELPQCI IPSSYIKRTD EGGEAEFIFG TYNMIDAAAE KRNGDEVYTL VDSQGLPYNW DALEMQWRY LYDTQLKVSP EELPLVITMP ATNGKPDMAI LERYYELAFD KLNVPVFQIV IEPLAIALSM GKSSAFVIDI G ASGCNVTP ...String:
MTLNRKCVVI HNGSHRTVAG FSNVELPQCI IPSSYIKRTD EGGEAEFIFG TYNMIDAAAE KRNGDEVYTL VDSQGLPYNW DALEMQWRY LYDTQLKVSP EELPLVITMP ATNGKPDMAI LERYYELAFD KLNVPVFQIV IEPLAIALSM GKSSAFVIDI G ASGCNVTP IIDGIVVKNA VVRSKFGGDF LDFQVHERLA PLIKEENDME NMADEQKRST DVWYEASTWI QQFKSTMLQV SE KDLFELE RYYKEQADIY AKQQEQLKQM DQQLQYTALT GSPNNPLVQK KNFLFKPLNK TLTLDLKECY QFAEYLFKPQ LIS DKFSPE DGLGPLMAKS VKKAGASINS MKANTSTNPN GLGTSHINTN VGDNNSTASS SNISPEQVYS LLLTNVIITG STSL IEGME QRIIKELSIR FPQYKLTTFA NQVMMDRKIQ GWLGALTMAN LPSWSLGKWY SKEDYETLKR DRKQSQATNA TN

+
Macromolecule #10: Actin-like protein ARP9

MacromoleculeName: Actin-like protein ARP9 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
Molecular weightTheoretical: 53.13193 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString: MAPFRQDSIL IIYPRSQTTL VQFGLNEETF TVPELEIPTQ IYRTTRQDGS YTYHSTNKDN KAELIKPIQN GEIIDISAFT QFLRLIFVS ILSDRANKNQ DAFEAELSNI PLLLITHHSW SQSDLEIITQ YVFESLEINN LIQLPASLAA TYSMISLQNC C IIDVGTHH ...String:
MAPFRQDSIL IIYPRSQTTL VQFGLNEETF TVPELEIPTQ IYRTTRQDGS YTYHSTNKDN KAELIKPIQN GEIIDISAFT QFLRLIFVS ILSDRANKNQ DAFEAELSNI PLLLITHHSW SQSDLEIITQ YVFESLEINN LIQLPASLAA TYSMISLQNC C IIDVGTHH TDIIPIVDYA QLDHLVSSIP MGGQSINDSL KKLLPQWDDD QIESLKKSPI FEVLSDDAKK LSSFDFGNEN ED EDEGTLN VAEIITSGRD TREVLEERER GQKVKNVKNS DLEFNTFWDE KGNEIKVGKQ RFQGCNNLIK NISNRVGLTL DNI DDINKA KAVWENIIIV GGTTSISGFK EALLGQLLKD HLIIEPEEEK SKREEEAKSV LPAATKKKSK FMTNSTAFVP TIEY VQCPT VIKLAKYPDY FPEWKKSGYS EIIFLGAQIV SKQIFTHPKD TFYITREKYN MKGPAALWDV QF

+
Macromolecule #11: Histone H3.2

MacromoleculeName: Histone H3.2 / type: protein_or_peptide / ID: 11 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Xenopus laevis (African clawed frog)
Molecular weightTheoretical: 15.289904 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString:
ARTKQTARKS TGGKAPRKQL ATKAARKSAP ATGGVKKPHR YRPGTVALRE IRRYQKSTEL LIRKLPFQRL VREIAQDFKT DLRFQSSAV MALQEASEAY LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

+
Macromolecule #12: Histone H4

MacromoleculeName: Histone H4 / type: protein_or_peptide / ID: 12 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Xenopus laevis (African clawed frog)
Molecular weightTheoretical: 11.263231 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString:
SGRGKGGKGL GKGGAKRHRK VLRDNIQGIT KPAIRRLARR GGVKRISGLI YEETRGVLKV FLENVIRDAV TYTEHAKRKT VTAMDVVYA LKRQGRTLYG FGG

+
Macromolecule #13: Histone H2A

MacromoleculeName: Histone H2A / type: protein_or_peptide / ID: 13 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Xenopus laevis (African clawed frog)
Molecular weightTheoretical: 13.978241 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString:
SGRGKQGGKT RAKAKTRSSR AGLQFPVGRV HRLLRKGNYA ERVGAGAPVY LAAVLEYLTA EILELAGNAA RDNKKTRIIP RHLQLAVRN DEELNKLLGR VTIAQGGVLP NIQSVLLPKK TESSKSAKSK

+
Macromolecule #14: Histone H2B 1.1

MacromoleculeName: Histone H2B 1.1 / type: protein_or_peptide / ID: 14 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Xenopus laevis (African clawed frog)
Molecular weightTheoretical: 13.524752 KDa
Recombinant expressionOrganism: Escherichia coli-Pichia pastoris shuttle vector pPpARG4 (others)
SequenceString:
AKSAPAPKKG SKKAVTKTQK KDGKKRRKTR KESYAIYVYK VLKQVHPDTG ISSKAMSIMN SFVNDVFERI AGEASRLAHY NKRSTITSR EIQTAVRLLL PGELAKHAVS EGTKAVTKYT SAK

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Macromolecule #15: DNA (239-MER)

MacromoleculeName: DNA (239-MER) / type: dna / ID: 15 / Number of copies: 1 / Classification: DNA
Source (natural)Organism: synthetic construct (others)
Molecular weightTheoretical: 72.380109 KDa
SequenceString: (DT)(DT)(DA)(DT)(DG)(DT)(DG)(DA)(DT)(DG) (DG)(DA)(DC)(DC)(DC)(DT)(DA)(DT)(DA)(DC) (DG)(DC)(DG)(DG)(DC)(DC)(DG)(DC)(DC) (DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA)(DT)(DC) (DC) (DC)(DG)(DG)(DT)(DG)(DC) ...String:
(DT)(DT)(DA)(DT)(DG)(DT)(DG)(DA)(DT)(DG) (DG)(DA)(DC)(DC)(DC)(DT)(DA)(DT)(DA)(DC) (DG)(DC)(DG)(DG)(DC)(DC)(DG)(DC)(DC) (DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA)(DT)(DC) (DC) (DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG) (DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA) (DA)(DT) (DT)(DG)(DG)(DT)(DC)(DG)(DT) (DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT) (DA)(DG)(DC) (DA)(DC)(DC)(DG)(DC)(DT) (DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG) (DT)(DA)(DC)(DG) (DC)(DG)(DC)(DT)(DG) (DT)(DC)(DC)(DC)(DC)(DC)(DG)(DC)(DG)(DT) (DT)(DT)(DT)(DA)(DA) (DC)(DC)(DG)(DC) (DC)(DA)(DA)(DG)(DG)(DG)(DG)(DA)(DT)(DT) (DA)(DC)(DT)(DC)(DC)(DC) (DT)(DA)(DG) (DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(DC)(DA) (DC)(DG)(DT)(DG)(DT)(DC)(DA) (DG)(DA) (DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA)(DT)(DC) (DC)(DT)(DG)(DA)(DA)(DG)(DC)(DT) (DT) (DG)(DT)(DC)(DG)(DA)(DG)(DA)(DA)(DG)(DT) (DA)(DC)(DT)(DA)(DG)(DA)(DG)(DG)(DA) (DT)(DC)(DA)(DT)(DA)(DA)(DT)(DC)(DA)(DG) (DC)(DC)(DA)(DT)(DA)(DC)(DC)(DA)(DC)(DA) (DT)(DT)(DT)(DG)(DT)(DA)(DG)(DA)(DG) (DG)(DT)(DT)(DT)(DT)(DA)

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Macromolecule #16: DNA (239-MER)

MacromoleculeName: DNA (239-MER) / type: dna / ID: 16 / Number of copies: 1 / Classification: DNA
Source (natural)Organism: synthetic construct (others)
Molecular weightTheoretical: 72.740328 KDa
SequenceString: (DT)(DA)(DA)(DA)(DA)(DC)(DC)(DT)(DC)(DT) (DA)(DC)(DA)(DA)(DA)(DT)(DG)(DT)(DG)(DG) (DT)(DA)(DT)(DG)(DG)(DC)(DT)(DG)(DA) (DT)(DT)(DA)(DT)(DG)(DA)(DT)(DC)(DC)(DT) (DC) (DT)(DA)(DG)(DT)(DA)(DC) ...String:
(DT)(DA)(DA)(DA)(DA)(DC)(DC)(DT)(DC)(DT) (DA)(DC)(DA)(DA)(DA)(DT)(DG)(DT)(DG)(DG) (DT)(DA)(DT)(DG)(DG)(DC)(DT)(DG)(DA) (DT)(DT)(DA)(DT)(DG)(DA)(DT)(DC)(DC)(DT) (DC) (DT)(DA)(DG)(DT)(DA)(DC)(DT)(DT) (DC)(DT)(DC)(DG)(DA)(DC)(DA)(DA)(DG)(DC) (DT)(DT) (DC)(DA)(DG)(DG)(DA)(DT)(DG) (DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG) (DA)(DC)(DA) (DC)(DG)(DT)(DG)(DC)(DC) (DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG) (DG)(DG)(DA)(DG) (DT)(DA)(DA)(DT)(DC) (DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG) (DT)(DT)(DA)(DA)(DA) (DA)(DC)(DG)(DC) (DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC) (DG)(DC)(DG)(DT)(DA)(DC) (DG)(DT)(DG) (DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG) (DG)(DT)(DG)(DC)(DT)(DA)(DG) (DA)(DG) (DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA) (DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA) (DG) (DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC) (DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DT) (DC)(DT)(DC)(DC)(DA)(DG)(DG)(DG)(DC)(DG) (DG)(DC)(DC)(DG)(DC)(DG)(DT)(DA)(DT)(DA) (DG)(DG)(DG)(DT)(DC)(DC)(DA)(DT)(DC) (DA)(DC)(DA)(DT)(DA)(DA)

+
Macromolecule #17: ADENOSINE-5'-DIPHOSPHATE

MacromoleculeName: ADENOSINE-5'-DIPHOSPHATE / type: ligand / ID: 17 / Number of copies: 1 / Formula: ADP
Molecular weightTheoretical: 427.201 Da
Chemical component information

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM / Adenosine diphosphate

+
Macromolecule #18: BERYLLIUM TRIFLUORIDE ION

MacromoleculeName: BERYLLIUM TRIFLUORIDE ION / type: ligand / ID: 18 / Number of copies: 1 / Formula: BEF
Molecular weightTheoretical: 66.007 Da
Chemical component information

ChemComp-BEF:
BERYLLIUM TRIFLUORIDE ION

+
Macromolecule #19: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 19 / Number of copies: 1 / Formula: MG
Molecular weightTheoretical: 24.305 Da

-
Experimental details

-
Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

-
Sample preparation

Concentration1 mg/mL
BufferpH: 7.5
VitrificationCryogen name: ETHANE

-
Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: OTHER / Imaging mode: BRIGHT FIELDBright-field microscopy
Image recordingFilm or detector model: GATAN K3 (6k x 4k) / Average electron dose: 50.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

-
Image processing

Initial angle assignmentType: RANDOM ASSIGNMENT
Final angle assignmentType: OTHER
Final reconstructionResolution.type: BY AUTHOR / Resolution: 6.9 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 229461

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