+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-27714 | |||||||||
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Title | Tail of P1 bacteriophage | |||||||||
Map data | Tail of P1 bacteriophage | |||||||||
Sample |
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Keywords | phage tail / helical / cryo-TEM / CONTRACTILE PROTEIN | |||||||||
Biological species | Escherichia phage P1 (virus) | |||||||||
Method | helical reconstruction / cryo EM / Resolution: 3.53 Å | |||||||||
Authors | Sen A / Bhatt V / Kim K / Bouchet-Marquis C | |||||||||
Funding support | United States, 1 items
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Citation | Journal: To Be Published Title: Tail of P1 bacteriophage Authors: Sen A / Bhatt V / Kim K / Bouchet-Marquis C | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_27714.map.gz | 483.8 MB | EMDB map data format | |
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Header (meta data) | emd-27714-v30.xml emd-27714.xml | 13 KB 13 KB | Display Display | EMDB header |
Images | emd_27714.png | 209.8 KB | ||
Filedesc metadata | emd-27714.cif.gz | 4.7 KB | ||
Others | emd_27714_half_map_1.map.gz emd_27714_half_map_2.map.gz | 77.4 MB 77.4 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-27714 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-27714 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_27714.map.gz / Format: CCP4 / Size: 512 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Annotation | Tail of P1 bacteriophage | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.69445 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: half map of Tail of P1 bacteriophage
File | emd_27714_half_map_1.map | ||||||||||||
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Annotation | half map of Tail of P1 bacteriophage | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map of Tail of P1 bacteriophage
File | emd_27714_half_map_2.map | ||||||||||||
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Annotation | half map of Tail of P1 bacteriophage | ||||||||||||
Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Escherichia phage P1
Entire | Name: Escherichia phage P1 (virus) |
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Components |
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-Supramolecule #1: Escherichia phage P1
Supramolecule | Name: Escherichia phage P1 / type: virus / ID: 1 / Parent: 0 / Macromolecule list: all / NCBI-ID: 2886926 / Sci species name: Escherichia phage P1 / Virus type: VIRION / Virus isolate: OTHER / Virus enveloped: No / Virus empty: No |
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-Macromolecule #1: Phage tail protein
Macromolecule | Name: Phage tail protein / type: other / ID: 1 / Classification: other |
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Source (natural) | Organism: Escherichia phage P1 (virus) |
Sequence | String: MQRSWFNHRL TSAKQKSLLY KSLADLVQSM MDTFVDPWLE RITN RKSIF SMSKEDLETR TNELGQFFTI RTSNSSSVPM LLQQRLDEIH FKGTERPINQ TIY REFNGI SVLWDPIYAP VDLERHPYGT VLIPESTLET TGGTFGEMFL TSRGMISIPI ND LARTMGI ...String: MQRSWFNHRL TSAKQKSLLY KSLADLVQSM MDTFVDPWLE RITN RKSIF SMSKEDLETR TNELGQFFTI RTSNSSSVPM LLQQRLDEIH FKGTERPINQ TIY REFNGI SVLWDPIYAP VDLERHPYGT VLIPESTLET TGGTFGEMFL TSRGMISIPI ND LARTMGI TGTIDQSAIT EEILRKFNQF VKPLLPLHIV FDGLTLYLSV VVNEHADMIT L NEISDTEK AYCWFETSDT TSLTGVTSIS APITATPGGT IVKATPTFDR TRADDLLLDS DA |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | helical reconstruction |
Aggregation state | helical array |
-Sample preparation
Buffer | pH: 7.4 |
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Grid | Model: C-flat-1.2/1.3 / Pretreatment - Type: GLOW DISCHARGE |
Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | TFS GLACIOS |
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Electron beam | Acceleration voltage: 200 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Nominal defocus max: 1.5 µm / Nominal defocus min: 0.5 µm / Nominal magnification: 73000 |
Sample stage | Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER |
Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average exposure time: 9.4 sec. / Average electron dose: 30.0 e/Å2 |
-Image processing
Startup model | Type of model: OTHER |
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Final angle assignment | Type: NOT APPLICABLE |
Final reconstruction | Applied symmetry - Helical parameters - Δz: 39.15 Å Applied symmetry - Helical parameters - Δ&Phi: 19.32 ° Applied symmetry - Helical parameters - Axial symmetry: C6 (6 fold cyclic) Resolution.type: BY AUTHOR / Resolution: 3.53 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 119472 |