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- SASDG32: Sperm-associated antigen 1, PIH1 domain-containing protein 2 hete... -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDG32
SampleSperm-associated antigen 1, PIH1 domain-containing protein 2 heterodimer complex (SPAG1/PIH1D2)
  • Sperm-associated antigen 1 (protein), Homo sapiens
  • PIH1 domain-containing protein 2 (protein), Homo sapiens
Function / homology
Function and homology information


axonemal dynein complex assembly / R2TP complex / dynein axonemal particle / protein folding chaperone complex / box C/D snoRNP assembly / single fertilization / rRNA processing / small GTPase binding / protein stabilization / hydrolase activity ...axonemal dynein complex assembly / R2TP complex / dynein axonemal particle / protein folding chaperone complex / box C/D snoRNP assembly / single fertilization / rRNA processing / small GTPase binding / protein stabilization / hydrolase activity / ribonucleoprotein complex / GTP binding / cytosol / cytoplasm
Similarity search - Function
PIH1D1/2/3, CS-like domain / PIH1 CS-like domain / PIH1, N-terminal / PIH1 N-terminal domain / RNA-polymerase II-associated protein 3-like, C-terminal domain / Potential Monad-binding region of RPAP3 / Tetratricopeptide repeat 1 / Tetratricopeptide repeat / Tetratricopeptide repeat / TPR repeat region circular profile. ...PIH1D1/2/3, CS-like domain / PIH1 CS-like domain / PIH1, N-terminal / PIH1 N-terminal domain / RNA-polymerase II-associated protein 3-like, C-terminal domain / Potential Monad-binding region of RPAP3 / Tetratricopeptide repeat 1 / Tetratricopeptide repeat / Tetratricopeptide repeat / TPR repeat region circular profile. / TPR repeat profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / Tetratricopeptide-like helical domain superfamily
Similarity search - Domain/homology
Sperm-associated antigen 1 / PIH1 domain-containing protein 2
Similarity search - Component
Biological speciesHomo sapiens (human)
Contact author
  • Raphael Dos Santos Morais (University of Lorraine, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2937
Type: dummy / Radius of dummy atoms: 4.00 A / Chi-square value: 1.052 / P-value: 0.349324

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Sample

SampleName: Sperm-associated antigen 1, PIH1 domain-containing protein 2 heterodimer complex (SPAG1/PIH1D2)
Specimen concentration: 4 mg/ml / Entity id: 1599 / 1793
BufferName: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP / pH: 7.5
Entity #1599Type: protein / Description: Sperm-associated antigen 1 / Formula weight: 103.637 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q07617
Sequence: MTTKDYPSLW GFGTTKTFKI PIEHLDFKYI EKCSDVKHLE KILCVLRSGE EGYYPELTEF CEKHLQALAP ESRALRKDKP AATAASFTAE EWEKIDGDIK SWVSEIKKEE DKMHFHETET FPAMKDNLPP VRGSNSCLHV GKEKYSKRPT KKKTPRDYAE WDKFDVEKEC ...Sequence:
MTTKDYPSLW GFGTTKTFKI PIEHLDFKYI EKCSDVKHLE KILCVLRSGE EGYYPELTEF CEKHLQALAP ESRALRKDKP AATAASFTAE EWEKIDGDIK SWVSEIKKEE DKMHFHETET FPAMKDNLPP VRGSNSCLHV GKEKYSKRPT KKKTPRDYAE WDKFDVEKEC LKIDEDYKEK TVIDKSHLSK IETRIDTAGL TEKEKDFLAT REKEKGNEAF NSGDYEEAVM YYTRSISALP TVVAYNNRAQ AEIKLQNWNS AFQDCEKVLE LEPGNVKALL RRATTYKHQN KLREATEDLS KVLDVEPDND LAKKTLSEVE RDLKNSEAAS ETQTKGKRMV IQEIENSEDE EGKSGRKHED GGGDKKPAEP AGAARAAQPC VMGNIQKKLT GKAEGGKRPA RGAPQRGQTP EAGADKRSPR RASAAAAAGG GATGHPGGGQ GAENPAGLKS QGNELFRSGQ FAEAAGKYSA AIALLEPAGS EIADDLSILY SNRAACYLKE GNCSGCIQDC NRALELHPFS MKPLLRRAMA YETLEQYGKA YVDYKTVLQI DCGLQLANDS VNRLSRILME LDGPNWREKL SPIPAVPASV PLQAWHPAKE MISKQAGDSS SHRQQGITDE KTFKALKEEG NQCVNDKNYK DALSKYSECL KINNKECAIY TNRALCYLKL CQFEEAKQDC DQALQLADGN VKAFYRRALA HKGLKNYQKS LIDLNKVILL DPSIIEAKME LEEVTRLLNL KDKTAPFNKE KERRKIEIQE VNEGKEEPGR PAGEVSMGCL ASEKGGKSSR SPEDPEKLPI AKPNNAYEFG QIINALSTRK DKEACAHLLA ITAPKDLPMF LSNKLEGDTF LLLIQSLKNN LIEKDPSLVY QHLLYLSKAE RFKMMLTLIS KGQKELIEQL FEDLSDTPNN HFTLEDIQAL KRQYEL
Entity #1793Type: protein / Description: PIH1 domain-containing protein 2 / Formula weight: 36.248 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q8WWB5
Sequence: GPHMETSSKG LLTQVTQFWN LLDDLAQSDP EGYEKFIQQQ LKEGKQLCAA PEPQLCLQTR ILKPKEKILF INLCQWTRIP APQSTTHPVP LTVGKPEDTT EISDAYTVID VAYNPDVLHA AEKDQVKKNQ LIQMAMKCIE EKFQFTLSHS YHITKFRIKG SIQRMKQNLM ...Sequence:
GPHMETSSKG LLTQVTQFWN LLDDLAQSDP EGYEKFIQQQ LKEGKQLCAA PEPQLCLQTR ILKPKEKILF INLCQWTRIP APQSTTHPVP LTVGKPEDTT EISDAYTVID VAYNPDVLHA AEKDQVKKNQ LIQMAMKCIE EKFQFTLSHS YHITKFRIKG SIQRMKQNLM GIQTDSIDLR EKMRRELTLG QIRSSTMSNP DHFPQLLLPK DQVSGKAVCL IEEISSTEIQ VEMKMPAYEL KIVHDHSEKP LKIELKVELP GINSVSLCDL SVSEDDLLIE VSEKYRLHLN LPKLIDTEMT TAKFIKEKST LIITMPLV

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2 mm
DetectorName: Eiger 4M / Pixsize x: 75 mm
Scan
Title: Sperm-associated antigen 1, PIH1 domain-containing protein 2 heterodimer complex (SPAG1/PIH1D2)
Measurement date: Mar 21, 2019 / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 31 / Unit: 1/A /
MinMax
Q0.0041 0.5782
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 445 /
MinMax
Q0.0063853 0.208798
P(R) point1 445
R0 309
Result
Type of curve: sec /
ExperimentalPorod
MW190 kDa-
Volume-664 nm3

P(R)GuinierGuinier error
Forward scattering, I00.02307 0.02286 9.0E-5
Radius of gyration, Rg7.34 nm7.013 nm0.06

MinMax
D-30.9
Guinier point6 24

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