+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEU5 |
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Sample | Adenylation domain of DNA ligase A
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Function / homology | Function and homology information DNA ligase (NAD+) / DNA ligase (NAD+) activity / base-excision repair, DNA ligation / DNA ligation / peptidoglycan-based cell wall / DNA replication / magnesium ion binding / plasma membrane / cytosol Similarity search - Function |
Biological species | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (bacteria) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDEU5 |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2484 | Type: dummy / Radius of dummy atoms: 2.50 A / Chi-square value: 0.415 / P-value: 0.001620 |
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Model #2485 | Type: dummy / Radius of dummy atoms: 3.20 A / Chi-square value: 0.415 / P-value: 0.001620 |
Model #2482 | Type: atomic / Symmetry: P1 / Chi-square value: 0.560430650606525 / P-value: 0.000003 |
-Sample
Sample | Name: Adenylation domain of DNA ligase A / Specimen concentration: 12.5 mg/ml |
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Buffer | Name: 50 mM Tris-HCl 200 mM NaCl 2mM β-mercaptoethanol / pH: 8 |
Entity #1326 | Name: AdD / Type: protein / Description: DNA ligase A / Formula weight: 37.519 / Num. of mol.: 1 Source: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) References: UniProt: P9WNV1 Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG ...Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG DDYPVPEVLE VRGEVFFRLD DFQALNASLV EEGKAPFANP RNSAAGSLRQ KDPAVTARRR LRMICHGLGH VEGFRPATLH QAYLALRAWG LPVSEHTTLA TDLAGVRERI DYWGEHRHEV DHEIDGVVVK VDEVALQRRL GSTSRAPRWA IAYKYPPEHH HHHH |
-Experimental information
Beam | Instrument name: CSIR-Central Drug Research Institute Anton Paar SAXSpace City: Lucknow / 国: India / Type of source: X-ray in house / Wavelength: 0.154 Å / Dist. spec. to detc.: 0.3 mm | |||||||||||||||||||||||||||||||||
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Detector | Name: Mythen2 R 1K / Type: Hybrid Photon Counting (HPC) | |||||||||||||||||||||||||||||||||
Scan | Title: Adenylation domain of DNA ligase A / Measurement date: Sep 27, 2018 / Storage temperature: 4 °C / Cell temperature: 10 °C / Exposure time: 1800 sec. / Number of frames: 2 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 441 /
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Result | Type of curve: single_conc Comments: Ab initio dummy-atom models. Top = averaged spatial representation after multiple modelling runs (DAMFILT); Bottom = an example of an individual ab initio DAM model.
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