+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDDN9 |
---|---|
Sample | Mycobacterium tuberculosis DNA Ligase A
|
Function / homology | Function and homology information DNA ligase (NAD+) / DNA ligase (NAD+) activity / base-excision repair, DNA ligation / DNA ligation / peptidoglycan-based cell wall / DNA replication / magnesium ion binding / plasma membrane / cytosol Similarity search - Function |
Biological species | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (bacteria) |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Data source
SASBDB page | SASDDN9 |
---|
-Related structure data
Similar structure data |
---|
-External links
Related items in Molecule of the Month |
---|
-Models
Model #2163 | Type: dummy / Radius of dummy atoms: 4.25 A / Chi-square value: 0.873 / P-value: 0.077161 Search similar-shape structures of this assembly by Omokage search (details) |
---|
-Sample
Sample | Name: Mycobacterium tuberculosis DNA Ligase A / Specimen concentration: 1.3 mg/ml |
---|---|
Buffer | Name: 50 mM Tris-HCl, 200 mM NaCl, 2mM β-mercaptoethanol (BME) pH: 8 |
Entity #1188 | Name: LigA / Type: protein / Description: DNA ligase A / Formula weight: 76.079 / Num. of mol.: 1 Source: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) References: UniProt: P9WNV1 Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG ...Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG DDYPVPEVLE VRGEVFFRLD DFQALNASLV EEGKAPFANP RNSAAGSLRQ KDPAVTARRR LRMICHGLGH VEGFRPATLH QAYLALRAWG LPVSEHTTLA TDLAGVRERI DYWGEHRHEV DHEIDGVVVK VDEVALQRRL GSTSRAPRWA IAYKYPPEEA QTKLLDIRVN VGRTGRITPF AFMTPVKVAG STVGQATLHN ASEIKRKGVL IGDTVVIRKA GDVIPEVLGP VVELRDGSER EFIMPTTCPE CGSPLAPEKE GDADIRCPNA RGCPGQLRER VFHVASRNGL DIEVLGYEAG VALLQAKVIA DEGELFALTE RDLLRTDLFR TKAGELSANG KRLLVNLDKA KAAPLWRVLV ALSIRHVGPT AARALATEFG SLDAIAAAST DQLAAVEGVG PTIAAAVTEW FAVDWHREIV DKWRAAGVRM VDERDESVPR TLAGLTIVVT GSLTGFSRDD AKEAIVARGG KAAGSVSKKT NYVVAGDSPG SKYDKAVELG VPILDEDGFR RLLADGPASR THHHHHH |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.081 Å / Dist. spec. to detc.: 1.1 mm | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Mycobacterium tuberculosis DNA Ligase A / Measurement date: May 13, 2017 / Storage temperature: 4 °C / Cell temperature: 10 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
| ||||||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 338 /
| ||||||||||||||||||||||||||||||
Result | Type of curve: single_conc Comments: The model displayed in this entry is a DAMFILT averaged spatial representation obtained from an unknown number of individual DAM reconstructions.
|