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    - PDB-1c2x: 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.... -

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    Basic information

    Entry
    Database: PDB / ID: 1c2x
    Title5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
    Descriptor5S RIBOSOMAL RNA
    KeywordsRIBOSOME / 5S RRNA / 23S RRNA / LARGE RIBOSOMAL SUBUNIT / PROTEIN BIOSYNTHESIS / RIBONUCLEIC ACID / EM-RECONSTRUCTION / ATOMIC STRUCTURE / 3D ARRANGEMENT / FITTING
    Specimen sourceEscherichia coli / bacteria /
    MethodElectron microscopy (7.5 A resolution / Single particle / Vitreous ice (cryo EM))
    AuthorsBrimacombe, R. / Mueller, F.
    CitationJ. Mol. Biol., 2000, 298, 35-59

    primary. J. Mol. Biol., 2000, 298, 35-59 StrPapers
    The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
    F Mueller / I Sommer / P Baranov / R Matadeen / M Stoldt / J Wöhnert / M Görlach / M van Heel / R Brimacombe

    #1. J.Mol.Biol., 1997, 271, 524-
    A New Model for the Three-Dimensional Folding of Escherichia Coli 16S Ribosomal RNA. I. Fitting the RNA to a 3D Electron Microscopic Map at 20 Angstroms
    Mueller, F. / Brimacombe, R.

    #2. J.Mol.Biol., 1997, 271, 545-
    A New Model for the Three-Dimensional Folding of Escherichia Coli 16S Ribosomal RNA. II. The RNA-Protein Interaction Data
    Mueller, F. / Brimacombe, R.

    #3. J.Mol.Biol., 1997, 271, 566-
    A New Model for the Three-Dimensional Folding of Escherichia Coli 16S Ribosomal RNA. III. The Topography of the Functional Centre
    Mueller, F. / Stark, H. / Van Heel, M. / Rinke-Appel, J. / Brimacombe, R.

    DateDeposition: Jul 28, 1999 / Release: Apr 10, 2000 / Last modification: Feb 24, 2009

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    Assembly

    Deposited unit
    C: 5S RIBOSOMAL RNA

    38.8 kDa, 1 molecules
    Theoretical massNumber of molelcules
    Total
    (without water)
    38,7901
    Polyers38,7901
    Non-polymers00
    Water0

    Omokage search
    #1idetical with deposited unit / defined by author / Symmetry operations: (identity)x1
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    Components

    #1RNA chain / 5S RIBOSOMAL RNA / THIRD OF THE 3 RRNA CHAINS OF THE RIBOSOME / 5S RRNA / Source: Escherichia coli (gene. exp.)

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    Experimental details

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    Experiment

    ExperimentMethod: ELECTRON MICROSCOPY
    EM experimentReconstruction method: SINGLE PARTICLE / Specimen type: VITREOUS ICE (CRYO EM)

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    Sample preparation

    Assembly of specimenAggregation state: PARTICLE
    CrystalDescription: THE CRYST1 AND SCALE RECORDS ARE MEANINGLESS.

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    Processing

    SoftwareName: ERNA-3D / Classification: refinement
    ComputingStructure refinement: ERNA-3D
    EM single particle entitySymmetry type: ASYMMETRIC
    Atomic model buildingDetails: THIS FILE HAS BEEN GENERATED BY THE USE OF ALL RELEVANT BIOCHEMICAL CONSTRAINTS AND THE CONSTRAINTS GIVEN BY THE ELECTRON DENSITY CONTOUR OF THE RIBOSOME, WHICH WAS DERIVED FROM THE CRYO-ELECTRON MICROSCOPIC RECONSTRUCTION. THIS FILE IS PART OF A SET OF ALL THREE RIBONUCLEIC ACID CHAINS OF THE RIBOSOME TOGETHER WITH A NUMBER OF RIBOSOMAL PROTEINS WHICH ARE ALSO DEPOSITED WITH THE PDB DATA BANK. THE ATOMIC COORDINATES OF ALL THESE RIBOSOMAL COMPONENTS REFLECT THEIR POSITIONS IN THE 70S RIBOSOME.
    Ref space: REAL
    Atomic model building
    PDB-ID 3D fitting idID
    1C2X
    11
    1C2X
    12
    Least-squares processHighest resolution: 7.5 A
    Refine hist #LASTHighest resolution: 7.5 A
    Number of atoms included #LASTProtein: 0 / Nucleic acid: 2570 / Ligand: 0 / Solvent: 0 / Total: 2570

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