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TitleFlexible open conformation of the AP-3 complex explains its role in cargo recruitment at the Golgi.
Journal, issue, pagesJ Biol Chem, Vol. 297, Issue 5, Page 101334, Year 2021
Publish dateOct 22, 2021
AuthorsJannis Schoppe / Evelyn Schubert / Amir Apelbaum / Erdal Yavavli / Oliver Birkholz / Heike Stephanowitz / Yaping Han / Angela Perz / Oliver Hofnagel / Fan Liu / Jacob Piehler / Stefan Raunser / Christian Ungermann /
PubMed AbstractVesicle formation at endomembranes requires the selective concentration of cargo by coat proteins. Conserved adapter protein complexes at the Golgi (AP-3), the endosome (AP-1), or the plasma membrane ...Vesicle formation at endomembranes requires the selective concentration of cargo by coat proteins. Conserved adapter protein complexes at the Golgi (AP-3), the endosome (AP-1), or the plasma membrane (AP-2) with their conserved core domain and flexible ear domains mediate this function. These complexes also rely on the small GTPase Arf1 and/or specific phosphoinositides for membrane binding. The structural details that influence these processes, however, are still poorly understood. Here we present cryo-EM structures of the full-length stable 300 kDa yeast AP-3 complex. The structures reveal that AP-3 adopts an open conformation in solution, comparable to the membrane-bound conformations of AP-1 or AP-2. This open conformation appears to be far more flexible than AP-1 or AP-2, resulting in compact, intermediate, and stretched subconformations. Mass spectrometrical analysis of the cross-linked AP-3 complex further indicates that the ear domains are flexibly attached to the surface of the complex. Using biochemical reconstitution assays, we also show that efficient AP-3 recruitment to the membrane depends primarily on cargo binding. Once bound to cargo, AP-3 clustered and immobilized cargo molecules, as revealed by single-molecule imaging on polymer-supported membranes. We conclude that its flexible open state may enable AP-3 to bind and collect cargo at the Golgi and could thus allow coordinated vesicle formation at the trans-Golgi upon Arf1 activation.
External linksJ Biol Chem / PubMed:34688652 / PubMed Central
MethodsEM (single particle)
Resolution9.1 - 10.5 Å
Structure data

EMDB-13187, PDB-7p3x:
Homology model of the full-length AP-3 complex in a compact open conformation
Method: EM (single particle) / Resolution: 9.1 Å

EMDB-13188, PDB-7p3y:
Homology model of the full-length AP-3 complex in an intermediate open conformation
Method: EM (single particle) / Resolution: 10.1 Å

EMDB-13189, PDB-7p3z:
Homology model of the full-length AP-3 complex in a stretched open conformation
Method: EM (single particle) / Resolution: 10.5 Å

Source
  • saccharomyces cerevisiae (brewer's yeast)
KeywordsTRANSPORT PROTEIN / adaptor protein / vesicle transport / AP-3 / homology model

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