Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Structure of the immature retroviral capsid at 8 Å resolution by cryo-electron microscopy.
Journal, issue, pages	Nature, Vol. 487, Issue 7407, Page 385-389, Year 2012
Publish date	Jul 19, 2012
Authors	Tanmay A M Bharat / Norman E Davey / Pavel Ulbrich / James D Riches / Alex de Marco / Michaela Rumlova / Carsten Sachse / Tomas Ruml / John A G Briggs /
PubMed Abstract	The assembly of retroviruses such as HIV-1 is driven by oligomerization of their major structural protein, Gag. Gag is a multidomain polyprotein including three conserved folded domains: MA (matrix), ...The assembly of retroviruses such as HIV-1 is driven by oligomerization of their major structural protein, Gag. Gag is a multidomain polyprotein including three conserved folded domains: MA (matrix), CA (capsid) and NC (nucleocapsid). Assembly of an infectious virion proceeds in two stages. In the first stage, Gag oligomerization into a hexameric protein lattice leads to the formation of an incomplete, roughly spherical protein shell that buds through the plasma membrane of the infected cell to release an enveloped immature virus particle. In the second stage, cleavage of Gag by the viral protease leads to rearrangement of the particle interior, converting the non-infectious immature virus particle into a mature infectious virion. The immature Gag shell acts as the pivotal intermediate in assembly and is a potential target for anti-retroviral drugs both in inhibiting virus assembly and in disrupting virus maturation. However, detailed structural information on the immature Gag shell has not previously been available. For this reason it is unclear what protein conformations and interfaces mediate the interactions between domains and therefore the assembly of retrovirus particles, and what structural transitions are associated with retrovirus maturation. Here we solve the structure of the immature retroviral Gag shell from Mason-Pfizer monkey virus by combining cryo-electron microscopy and tomography. The 8-Å resolution structure permits the derivation of a pseudo-atomic model of CA in the immature retrovirus, which defines the protein interfaces mediating retrovirus assembly. We show that transition of an immature retrovirus into its mature infectious form involves marked rotations and translations of CA domains, that the roles of the amino-terminal and carboxy-terminal domains of CA in assembling the immature and mature hexameric lattices are exchanged, and that the CA interactions that stabilize the immature and mature viruses are almost completely distinct.
External links	Nature / PubMed:22722831
Methods	EM (helical sym.)
Resolution	7.0 - 8.0 Å
Structure data	2089 4arg EMDB-2089: Structure of the immature retroviral capsid at 8A resolution by cryo-electron microscopy PDB-4arg: Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy Method: EM (helical sym.) / Resolution: 8.0 Å 2090 4ard 4arg EMDB-2090: Structure of the immature retroviral capsid at 8A resolution by cryo-electron microscopy PDB-4ard: Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy PDB-4arg: Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy Method: EM (helical sym.) / Resolution: 7.0 Å
Source	mason-pfizer monkey virus
Keywords	VIRAL PROTEIN / RETROVIRUS / GAG