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Structure paper

TitleStructural evidence for intermediates during O 2 formation in photosystem II.
Journal, issue, pagesNature, Vol. 617, Page 629-636, Year 2023
Publish dateOct 31, 2022 (structure data deposition date)
AuthorsBhowmick, A. / Hussein, R. / Bogacz, I. / Simon, P.S. / Ibrahim, M. / Chatterjee, R. / Doyle, M.D. / Cheah, M.H. / Fransson, T. / Chernev, P. ...Bhowmick, A. / Hussein, R. / Bogacz, I. / Simon, P.S. / Ibrahim, M. / Chatterjee, R. / Doyle, M.D. / Cheah, M.H. / Fransson, T. / Chernev, P. / Kim, I.S. / Makita, H. / Dasgupta, M. / Kaminsky, C.J. / Zhang, M. / Gatcke, J. / Haupt, S. / Nangca, I.I. / Keable, S.M. / Aydin, A.O. / Tono, K. / Owada, S. / Gee, L.B. / Fuller, F.D. / Batyuk, A. / Alonso-Mori, R. / Holton, J.M. / Paley, D.W. / Moriarty, N.W. / Mamedov, F. / Adams, P.D. / Brewster, A.S. / Dobbek, H. / Sauter, N.K. / Bergmann, U. / Zouni, A. / Messinger, J. / Kern, J. / Yano, J. / Yachandra, V.K.
External linksNature / PubMed:37138085
MethodsX-ray diffraction
Resolution2 - 2.16 Å
Structure data

PDB-8ez5:
RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-8f4c:
RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.00 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-8f4d:
RT XFEL structure of Photosystem II 50 microseconds after the third illumination at 2.15 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-8f4e:
RT XFEL structure of Photosystem II 250 microseconds after the third illumination at 2.09 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-8f4f:
RT XFEL structure of Photosystem II 500 microseconds after the third illumination at 2.03 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-8f4g:
RT XFEL structure of Photosystem II 730 microseconds after the third illumination at 2.03 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-8f4h:
RT XFEL structure of Photosystem II 1200 microseconds after the third illumination at 2.10 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8f4i:
RT XFEL structure of Photosystem II 2000 microseconds after the third illumination at 2.00 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-8f4j:
RT XFEL structure of Photosystem II 4000 microseconds after the third illumination at 2.00 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-8f4k:
RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.16 Angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

Chemicals

ChemComp-OEY:
CA-MN4-O6 CLUSTER

ChemComp-OEX:
CA-MN4-O5 CLUSTER

ChemComp-FE2:
Unknown entry

ChemComp-CL:
Unknown entry / Chloride

ChemComp-CLA:
CHLOROPHYLL A / Chlorophyll a

ChemComp-PHO:
PHEOPHYTIN A / Pheophytin

ChemComp-BCR:
BETA-CAROTENE / Β-Carotene

ChemComp-PL9:
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE / Plastoquinone

ChemComp-LMG:
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

ChemComp-SQD:
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

ChemComp-LHG:
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / phospholipid*YM / Phosphatidylglycerol

ChemComp-DGD:
DIGALACTOSYL DIACYL GLYCEROL (DGDG)

ChemComp-STE:
STEARIC ACID / Stearic acid

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM / Bicarbonate

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE / Heme B

ChemComp-HEC:
HEME C / Heme C

ChemComp-HOH:
WATER / Water

Source
  • thermosynechococcus vestitus bp-1 (bacteria)
KeywordsPHOTOSYNTHESIS / water oxidation / OEC / Manganese complex / oxygenic photosynthesis / Manganese cluster

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