Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing 1 - 50 of 5,468 items (all data)

    PDB-1brd: Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy

    3D view:

    PDB-2brd: CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN PURPLE MEMBRANE

    3D view:

    PDB-2rec: RECA HEXAMER MODEL, ELECTRON MICROSCOPY

    3D view:

    PDB-1at9: STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

    3D view:

    PDB-1tub: TUBULIN ALPHA-BETA DIMER, ELECTRON DIFFRACTION

    3D view:

    PDB-1kvp: STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY

    3D view:

    PDB-2at9: STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY

    3D view:

    PDB-1qgc: STRUCTURE OF THE COMPLEX OF A FAB FRAGMENT OF A NEUTRALIZING ANTIBODY WITH FOOT AND MOUTH DISEASE VIRUS

    3D view:

    PDB-1c2w: 23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION

    3D view:

    PDB-1c2x: 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION

    3D view:

    PDB-1d3e: CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

    3D view:

    PDB-1d3i: CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

    3D view:

    PDB-1dgi: Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155

    3D view:

    PDB-1dyl: 9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY

    3D view:

    PDB-1eg0: FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME

    3D view:

    PDB-487d: SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION

    3D view:

    PDB-1fbb: CRYSTAL STRUCTURE OF NATIVE CONFORMATION OF BACTERIORHODOPSIN

    3D view:

    PDB-1fbk: CRYSTAL STRUCTURE OF CYTOPLASMICALLY OPEN CONFORMATION OF BACTERIORHODOPSIN

    3D view:

    PDB-1fcw: TRNA POSITIONS DURING THE ELONGATION CYCLE

    3D view:

    PDB-1foq: PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA

    3D view:

    PDB-1fqy: STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY

    3D view:

    PDB-1i84: CRYO-EM STRUCTURE OF THE HEAVY MEROMYOSIN SUBFRAGMENT OF CHICKEN GIZZARD SMOOTH MUSCLE MYOSIN WITH REGULATORY LIGHT CHAIN IN THE DEPHOSPHORYLATED STATE. ONLY C ALPHAS PROVIDED FOR REGULATORY LIGHT CHAIN. ONLY BACKBONE ATOMS PROVIDED FOR S2 FRAGMENT.

    3D view:

    PDB-1ia0: KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM

    3D view:

    PDB-1hb5: quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.

    3D view:

    PDB-1if0: PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

    3D view:

    PDB-1hb7: quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.

    3D view:

    PDB-1hb9: quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.

    3D view:

    PDB-1ih5: CRYSTAL STRUCTURE OF AQUAPORIN-1

    3D view:

    PDB-1h6i: A REFINED STRUCTURE OF HUMAN AQUAPORIN 1

    3D view:

    PDB-1jew: CRYO-EM STRUCTURE OF COXSACKIEVIRUS B3(M STRAIN) WITH ITS CELLULAR RECEPTOR, COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (CAR).

    3D view:

    PDB-1jff: Refined structure of alpha-beta tubulin from zinc-induced sheets stabilized with taxol

    3D view:

    PDB-1jqm: Fitting of L11 protein and elongation factor G (EF-G) in the cryo-em map of e. coli 70S ribosome bound with EF-G, GDP and fusidic acid

    3D view:

    PDB-1jqs: Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog

    3D view:

    PDB-1jqt: Fitting of L11 protein in the low resolution cryo-EM map of E.coli 70S ribosome

    3D view:

    PDB-1k4r: Structure of Dengue Virus

    3D view:

    PDB-1kju: Ca2+-ATPase in the E2 State

    3D view:

    PDB-1gr5: Solution Structure of apo GroEL by Cryo-Electron microscopy

    3D view:

    PDB-1gru: SOLUTION STRUCTURE OF GROES-ADP7-GROEL-ATP7 COMPLEX BY CRYO-EM

    3D view:

    PDB-1gw7: QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.

    3D view:

    PDB-1gw8: quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.

    3D view:

    PDB-1ld4: Placement of the Structural Proteins in Sindbis Virus

    3D view:

    PDB-1ls2: Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome

    3D view:

    PDB-1lu3: Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome

    3D view:

    PDB-1m0f: Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy

    3D view:

    PDB-1m11: structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy

    3D view:

    EMDB-1001: Real space refinement of acto-myosin structures from sectioned muscle.

    3D view:

    EMDB-1003: Solution structure of the E. coli 70S ribosome at 11.5 A resolution.

    3D view:

    EMDB-1017: The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

    3D view:

    PDB-1m4x: PBCV-1 virus capsid, quasi-atomic model

    3D view:

    PDB-1m8q: Molecular Models of Averaged Rigor Crossbridges from Tomograms of Insect Flight Muscle

    3D view:

    Pages:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more