[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,338 items for database: PDB

PDB-5gzr:
Zika virus E protein complexed with a neutralizing antibody Z23-Fab

PDB-5h30:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5

PDB-5h32:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0

PDB-5h37:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0

PDB-5jb3:
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

PDB-5luf:
Cryo-EM of bovine respirasome

PDB-5lwg:
Israeli acute paralysis virus heated to 63 degree - full particle

PDB-5lwi:
Israeli acute paralysis virus heated to 63 degree - empty particle

PDB-5lzs:
Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

PDB-5lzt:
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

PDB-5lzu:
Structure of the mammalian ribosomal termination complex with accommodated eRF1

PDB-5lzv:
Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

PDB-5lzw:
Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

PDB-5lzx:
Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

PDB-5lzy:
Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

PDB-5lzz:
Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

PDB-5m5i:
Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus conformation allows formation of a cover neck bundle.

PDB-5m5l:
Pseudo-atomic model of microtubule-bound S. pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations

PDB-5m5m:
Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

PDB-5m5n:
Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

PDB-5m5o:
Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

PDB-5g5p:
Structure of the Saccharomyces cerevisiae TREX-2 complex

PDB-5lnk:
Entire ovine respiratory complex I

PDB-5lza:
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

PDB-5lzb:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

PDB-5lzc:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

PDB-5lzd:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

PDB-5lze:
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

PDB-5lzf:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

PDB-5lzp:
Binding of the C-terminal GQYL motif of the bacterial proteasome activator Bpa to the 20S proteasome

PDB-5m3f:
Yeast RNA polymerase I elongation complex at 3.8A

PDB-5m3m:
Free monomeric RNA polymerase I at 4.0A resolution

PDB-5me2:
CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate

PDB-3jbz:
Crystal structure of mTOR docked into EM map of dimeric ATM kinase

PDB-5jcs:
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

PDB-5jxl:
Cryo-EM structure of the flagellar hook of Campylobacter jejuni

PDB-5ljv:
MamK double helical filament

PDB-5lqx:
Structure of F-ATPase from Pichia angusta, state3

PDB-5lqy:
Structure of F-ATPase from Pichia angusta, state2

PDB-5lqz:
Structure of F-ATPase from Pichia angusta, state1

PDB-5lw7:
S. solfataricus ABCE1 post-splitting state

PDB-5thr:
Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex

PDB-5tqw:
CryoEM reconstruction of human IKK1, open conformation 1

PDB-5tqx:
CryoEM reconstruction of human IKK1, intermediate conformation 2

PDB-5tqy:
CryoEM reconstruction of human IKK1, closed conformation 3

PDB-5ktz:
expanded poliovirus in complex with VHH 12B

PDB-5ku0:
expanded poliovirus in complex with VHH 17B

PDB-5ku2:
expanded poliovirus in complex with VHH 7A

PDB-5kwl:
expanded poliovirus in complex with VHH 10E

PDB-5l08:
Cryo-EM structure of Casp-8 tDED filament

Pages:

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more