Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing 1 - 50 of 142 items for Latest entries: updated map

    EMDB-8279: Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
    Method: single particle / : Loveland AB, Bah E
    3D view:

    EMDB-8280: Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
    Method: single particle / : Loveland AB, Bah E
    3D view:

    EMDB-8281: Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
    Method: single particle / : Loveland AB, Bah E
    3D view:

    EMDB-8282: Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
    Method: single particle / : Loveland AB, Bah E
    3D view:

    EMDB-3402: Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
    Method: icosahedral / : Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ
    3D view:

    EMDB-8183: helical filament
    Method: helical / : Short J, Liu Y
    3D view:

    EMDB-8299: AMC011 HIV-1 Env SOSIP trimer in complex with autologous anti-HIV antibody ACS202
    Method: single particle / : Ozorowski G, Ward AB
    3D view:

    EMDB-8302: HIV Clade B Env SOSIP ectodomain trimer from the Amsterdam Cohort Study patient AMC011 in complex with Fab from IgG PGV04
    Method: single particle / : Pallesen J, de Val N, Ozorowski G, Cottrell CA, Ward AB
    3D view:

    EMDB-9517: cryo-EM structure of human Aichi virus
    Method: single particle / : Zhu L, Wang XX, Ren JS, Tuthill TJ, Fry EE, Rao ZH, Stuart DI
    3D view:

    EMDB-9524: Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
    Method: single particle / : Yan C, Wan R
    3D view:

    EMDB-9535: Cryo-EM Structure of the PaeCas3-AcrF3 complex
    Method: single particle / : Zhang X, Ma J, Wang Y, Wang J
    3D view:

    EMDB-4041: Structure of mammalian respiratory Complex I, class3
    Method: single particle / : Vinothkumar KR, Zhu J
    3D view:

    EMDB-8073: Structure of open state rabbit ryanodine receptor 1 activated by calcium ion
    Method: single particle / : Wang X, Wei R, Yin C, Sun F
    3D view:

    EMDB-8196: Structure of NNQQNY from yeast prion Sup35 with zinc acetate determined by MicroED
    Method: electron crystallography / : Rodriguez JA, Sawaya MR
    3D view:

    EMDB-8197: Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED
    Method: electron crystallography / : Rodriguez JA, Sawaya MR
    3D view:

    EMDB-8198: Structure of GNNQQNY from yeast prion Sup35 in space group P21 determined by MicroED
    Method: electron crystallography / : Rodriguez JA, Sawaya MR
    3D view:

    EMDB-8199: Structure of GNNQQNY from yeast prion Sup35 in space group P212121 determined by MicroED
    Method: electron crystallography / : Rodriguez JA, Sawaya MR
    3D view:

    EMDB-8288: Putative tetramer of human CPAP (residues 897-1338)
    Method: single particle / : Alvarez-Cabrera AL, Delgado S, Gil D, Mortuza G, Montoya G, Sorzano CO, Tang TK, Carazo JM
    3D view:

    EMDB-8331: Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy
    Method: single particle / : Walls AC, Tortorici MA
    3D view:

    EMDB-8360: Asymmetric reconstruction of bacteriophage MS2
    Method: single particle / : Nazarov SU, Guerrero-Ferreira RC, Zhong Q, Kohn T, Leiman PG
    3D view:

    EMDB-9513: Cryo-EM map of the rabbit voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution
    Method: single particle / : Wu JP, Yan Z
    3D view:

    EMDB-9514: ClassIa map of the rabbit voltage-gated calcium channel Cav1.1
    Method: single particle / : Wu JP, Yan Z, Li ZQ, Zhou Q, Yan N
    3D view:

    EMDB-9515: ClassII map of the rabbit voltage-gated calcium channel Cav1.1
    Method: single particle / : Wu JP, Yan Z
    3D view:

    EMDB-4029: An engineered human cohesin complex bound to Pds5B
    Method: single particle / : Hons MT, Huis in 't Veld PJ, Stark H, Peters JM
    3D view:

    EMDB-4030: An engineered human cohesin complex
    Method: single particle / : Hons MT, Huis in't Veld PJ, Stark H, Peters JM
    3D view:

    EMDB-4031: An engineered trimeric human cohesin complex (-SA1) bound to Pds5B
    Method: single particle / : Hons MT, Huis in't Veld PJ, Stark H, Peters JM
    3D view:

    EMDB-4032: Structure of mammalian respiratory Complex I, class2
    Method: single particle / : Vinothkumar KR, Zhu J
    3D view:

    EMDB-4040: Structure of mammalian respiratory Complex I, class1
    Method: single particle / : Vinothkumar KR, Zhu J
    3D view:

    EMDB-4042: Cryo-EM structure of the bacterial sex F pilus (pED208)
    Method: helical / : Costa TRD, Ilangovan I
    3D view:

    EMDB-4044: Cryo-EM structure of the bacterial sex F pilus (13.2 Angstrom rise)
    Method: helical / : Costa TRD, Ilangovan I
    3D view:

    EMDB-4046: Cryo-EM structure of the bacterial sex F pilus (12.5 Angstrom rise)
    Method: helical / : Costa TRD, Ilangovan I
    3D view:

    EMDB-4049: Ribosomal 18S rRNA base pairs with mRNA during eukaryotic translation initiation
    Method: single particle / : Martin F, Menetret JF, Simonetti A, Myasniko AG, Vicens Q, Prongidi-Fix L, Natchiar SK, Klaholz BP, Eriani G
    3D view:

    EMDB-4105: TRF1 apo
    Method: single particle / : Boskovic J, Martinez-Gago J, Mendez-Pertuz M, Buscato A, Martinez-Torrecuadrada JL, Blasco MA
    3D view:

    EMDB-4106: TRF1-DNA
    Method: single particle / : Boskovic J, Martinez-Gago J, Mendez-Pertuz M, Buscato A, Martinez-Torrecuadrada JL, Blasco MA
    3D view:

    EMDB-8141: Cryo-EM structure of the human FANCD2/FANCI complex reveals a novel Tower domain required for FANCD2 monoubiquitination- Full length FANCD2/FANCI
    Method: single particle / : Liang CC, Li Z, Nicholson WV, Venien-Bryan C, Cohn MA
    3D view:

    EMDB-8142: Cryo-EM structure of the human FANCD2/FANCI complex reveals a novel Tower domain required for FANCD2 monoubiquitination- FANCD2-minusTower/FANCI complex
    Method: single particle / : Liang CC, Li Z, Nicholson WV, Venien-Bryan C, Cohn MA
    3D view:

    EMDB-8161: Nervous wreck (Nwk aa 1-731) on lipid monolayer
    Method: single particle / : Rodal AA, Sokolova OS, Stanishneva-Konovalova TB
    3D view:

    EMDB-8289: GluK2EM with 2S,4R-4-methylglutamate
    Method: single particle / : Meyerson JR, Chittori S
    3D view:

    EMDB-8290: GluK2EM with LY466195
    Method: single particle / : Meyerson JR, Chittori S
    3D view:

    EMDB-8298: Structure of Iho670 Flagellar-like Filament
    Method: helical / : Braun T, Vos M
    3D view:

    EMDB-4057: Structure of the yeast spliceosome immediately after branching. 3D class containing helicase module.
    Method: single particle / : Galej WP, Wilkinson MF
    3D view:

    EMDB-4068: Cryo-EM structure of the Tc toxin TcdA1 in its pore state
    Method: single particle / : Gatsogiannis C, Merino F
    3D view:

    EMDB-3025: Electron cryo-microscopy of EBV gp350-based ferritin nanoparticle
    Method: single particle / : Kanekiyo M, Bu W, Joyce MG, Meng G, Whittle JRR, Baxa U, Yamamoto T, Narpala S, Todd JP, Rao SS, McDermott AB, Koup RA, Rossmann MG, Mascola JR, Graham BS, Cohen JI, Nabel GJ
    3D view:

    EMDB-3075: Cyclophilin A Stabilizes HIV-1 Capsid through a Novel Non-canonical Binding Site
    Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P
    3D view:

    EMDB-3270: Importin-beta can bind Hepatitis B Virus core protein and empty core-like particles and induce structural changes
    Method: icosahedral / : Chen C, Wang JC-Y, Pierson EE, Kiefer DZ, Delaleau M, Gallucci L, Cazenave C, Kann M, Jarrold MF, Zlotnick A
    3D view:

    EMDB-8200: CryoEM structure of a human TRP channel
    Method: single particle / : Pike ACW, Grieben M
    3D view:

    EMDB-9518: Cryo-EM map of RyR1 in a closed state (C1 conformer)
    Method: single particle / : Bai XC, Yan Z
    3D view:

    EMDB-9519: Cryo-EM map of RyR1 in a closed state (C3 conformer)
    Method: single particle / : Bai XC, Yan Z
    3D view:

    EMDB-9520: Cryo-EM map of RyR1 in a closed state (C4 conformer)
    Method: single particle / : Bai XC, Yan Z
    3D view:

    EMDB-9521: Cryo-EM map of RyR1 in an open state
    Method: single particle / : Bai XC, Yan Z
    3D view:

    Pages:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more