[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,507 items for (author: zhao & p)

EMDB-36730:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies

EMDB-36735:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C3 symmetry)

EMDB-36740:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C1 symmetry)

EMDB-35827:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate

EMDB-37652:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate

EMDB-37656:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)

EMDB-37657:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)

EMDB-37762:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)

PDB-8iyq:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate

PDB-8wmh:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate

PDB-8wmm:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)

PDB-8wmn:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)

PDB-8wr4:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)

EMDB-18313:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)

EMDB-18314:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)

EMDB-18315:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)

EMDB-18317:
Retron-Eco1 filament (2 segments)

EMDB-19792:
Retron-Eco1 -1 turn mutant filament with ADP-ribosylated Effector (Consensus refinement)

EMDB-19793:
Retron-Eco1 filament with ADP-ribosylated Effector (Consensus refinement)

PDB-8qbk:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)

PDB-8qbl:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)

PDB-8qbm:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)

EMDB-44737:
WT Pseudomonas phage PP7 capped tube VLP

EMDB-44743:
WT Pseudomonas phage PP7 open tube VLP

EMDB-44767:
C2 cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-44768:
C3 cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-44773:
D5 cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-44782:
D5E cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-44783:
Icosahedral T=3 cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-44788:
Icosahedral T=4 cage of PP7-AY-PP7: Pseudomonas phage PP7 coat protein dimer

EMDB-39838:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 1

EMDB-39848:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2

EMDB-39849:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 3

EMDB-39850:
Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation

EMDB-39852:
Cryo-EM structure of Thogoto virus polymerase in transcription initiation conformation 2

EMDB-39855:
Cryo-EM structure of Thogoto virus polymerase in transcription elongation conformation

EMDB-39856:
Cryo-EM structure of Thogoto virus polymerase in transcription reception conformation

EMDB-39862:
Cryo-EM structure of Thogoto virus polymerase in a transcription elongation-reception conformation

EMDB-39867:
Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation

EMDB-39868:
Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation

PDB-8z85:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 1

PDB-8z8j:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2

PDB-8z8n:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 3

PDB-8z8x:
Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation

PDB-8z90:
Cryo-EM structure of Thogoto virus polymerase in transcription initiation conformation 2

PDB-8z97:
Cryo-EM structure of Thogoto virus polymerase in transcription elongation conformation

PDB-8z98:
Cryo-EM structure of Thogoto virus polymerase in transcription reception conformation

PDB-8z9h:
Cryo-EM structure of Thogoto virus polymerase in a transcription elongation-reception conformation

PDB-8z9q:
Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation

PDB-8z9r:
Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more