[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 10,779 items for (author: zhang & z)

EMDB-18549:
Ammonium Transporter Amt1 from Shewanella denitrificans
Method: single particle / : Gschell M, Zhang L, Einsle O, Andrade S

PDB-8qpf:
Ammonium Transporter Amt1 from Shewanella denitrificans
Method: single particle / : Gschell M, Zhang L, Einsle O, Andrade S

EMDB-37756:
Cryo-EM structure of bsAb3 Fab-Gn-Gc complex
Method: single particle / : Wu Y, Sun JQ

PDB-8wqw:
Cryo-EM structure of bsAb3 Fab-Gn-Gc complex
Method: single particle / : Wu Y, Sun JQ

EMDB-42074:
Representative tomogram of Enterococcus faecium WT Com15
Method: electron tomography / : Hang HC, Park D

EMDB-42086:
Representative tomogram of Enterococcus faecium SagA complementation strain
Method: electron tomography / : Hang HC, Park D

EMDB-42087:
Representative tomogram of Enterococcus faecium SagA deletion strain
Method: electron tomography / : Hang HC, Park D

EMDB-44004:
SARS-CoV-2 Omicron-EG.5.1 1-RBD up Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-42869:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0t:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-42863:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0o:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-42342:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

PDB-8uk1:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-29022:
Reconstituted chromatin condensed by the PRC1-CBX8 complex
Method: electron tomography / : Uckelmann M, Taveneau C, Levina V, de Marco A, Davidovich C

EMDB-43450:
SARS-CoV-2 Omicron-XBB.1.16 1-RBD up Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-36461:
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Method: single particle / : Jia X, Zhang Q, Li S, Guo J

PDB-8jon:
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Method: single particle / : Jia X, Zhang Q, Li S, Guo J

EMDB-42872:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0w:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-34608:
NARROW LEAF 1-open from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

PDB-8hat:
NARROW LEAF 1-open from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-44007:
SARS-CoV-2 Omicron-EG.5.1 one NTD-RBD disordered Spike Protein Trimer (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-43453:
SARS-CoV-2 Omicron-XBB.1.16 1-RBD up Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-42866:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0q:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-43452:
SARS-CoV-2 Omicron-XBB.1.16 1-RBD up Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-44006:
SARS-CoV-2 Omicron-EG.5.1 one S1 disordered Spike Protein Trimer (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-44001:
SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

PDB-9ayx:
SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-43461:
SARS-CoV-2 Omicron-XBB.1.16 1.5-RBD-up Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-42868:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0s:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-42504:
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Method: single particle / : Molodtsov V, Wang C, Ebright RH

EMDB-43423:
SARS-CoV-2 Omicron-XBB.1.5 1-RBD up Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-42871:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0v:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-43451:
SARS-CoV-2 Omicron-XBB.1.16 1-RBD up Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-43460:
SARS-CoV-2 Omicron-XBB.1.16 1-RBD-up Spike Protein Trimer (S-RRAR-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-43464:
SARS-CoV-2 Omicron-EG.5 1.5-RBD up Spike Protein Trimer (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-43462:
SARS-CoV-2 Omicron-XBB.1.16 1.5-RBD-up Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

EMDB-42870:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0u:
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-42873:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

PDB-8v0x:
SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-43422:
SARS-CoV-2 Omicron-XBB.1.5 1-RBD up Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5)
Method: single particle / : Zhang QE, Acharya P

EMDB-44000:
SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

PDB-9ayw:
SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-44003:
SARS-CoV-2 Omicron-EG.5.1 1-RBD up Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5.1)
Method: single particle / : Zhang QE, Acharya P

EMDB-42302:
SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Method: single particle / : Zhang QE, Acharya P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more