Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing 1 - 50 of 110 items for author: zhang, & y

    PDB-5gqh: Cryo-EM structure of PaeCas3-AcrF3 complex
    Method: single particle / : Zhang X, Ma J, Wang Y, Wang J
    3D view:

    PDB-5sv9: Structure of the SLC4 transporter Bor1p in an inward-facing conformation
    Method: helical / : Coudray N, Seyler S, Lasala R, Zhang Z, Clark KM, Dumont ME, Rohou A, Beckstein O, Stokes DL, Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)
    3D view:

    PDB-5lcw: Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Mitotic checkpoint complex (APC/C-MCC) at 4.2 angstrom resolution
    Method: single particle / : Alfieri C, Chang L, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
    3D view:

    PDB-3jcs: 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
    Method: single particle / : Shalev-Benami M, Zhang Y, Matzov D, Halfon Y, Zackay A, Rozenberg H, Zimmerman E, Bashan A, Jaffe CL, Yonath A, Skiniotis G
    3D view:

    PDB-3jb8: Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by Single Particle Analysis
    Method: single particle / : Wang CY, Zhang QF, Gao YZ, Zhou XP, Ji G, Huang XJ, Hong J, Zhang CX
    3D view:

    PDB-3jct: Cryo-em structure of eukaryotic pre-60S ribosomal subunits
    Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N
    3D view:

    PDB-3jcu: Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
    Method: single particle / : Wei XP, Zhang XZ, Su XD, Cao P, Liu XY, Li M, Chang WR, Liu ZF
    3D view:

    PDB-5g04: Structure of the human APC-Cdc20-Hsl1 complex
    Method: single particle / : Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
    3D view:

    PDB-5g05: Cryo-EM structure of combined apo phosphorylated APC
    Method: single particle / : Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
    3D view:

    PDB-5iz7: Cryo-EM structure of thermally stable Zika virus strain H/PF/2013
    Method: single particle / : Kostyuchenko VA, Zhang S, Fibriansah G, Lok SM
    3D view:

    PDB-5fjb: Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non- canonical Binding Site
    Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P
    3D view:

    PDB-3jau: The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
    Method: icosahedral / : Fan C, Ye XH, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
    3D view:

    PDB-3jbu: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
    Method: single particle / : Zhang J, Pan XJ, Yan KG, Sun S, Gao N, Sui SF
    3D view:

    PDB-3jbv: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
    Method: single particle / : ZhangJ, PanXJ, YanKG, SunS, GaoN, SuiSF
    3D view:

    PDB-3jcd: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
    Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y
    3D view:

    PDB-3jce: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
    Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y
    3D view:

    PDB-5adx: CryoEM structure of dynactin complex at 4.0 angstrom resolution
    Method: single particle / : Zhang K, Urnavicius L, Diamant AG, Motz C, Schlage MA, Yu M, Patel NA, Robinson CV, Carter AP
    3D view:

    PDB-3jaa: HUMAN DNA POLYMERASE ETA in COMPLEX WITH NORMAL DNA AND INCO NUCLEOTIDE (NRM)
    Method: single particle / : Lau WCY, Li Y, Zhang Q, Huen MSY
    3D view:

    PDB-3j9d: Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
    Method: icosahedral / : Zhang X, Patel A, Celma C, Roy P, Zhou ZH
    3D view:

    PDB-3j9e: Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
    Method: icosahedral / : Zhang X, Patel A, Celma C, Roy P, Zhou ZH
    3D view:

    PDB-3ja6: Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling
    Method: electron tomography / : Cassidy CK, Himes BA, Alvarez FJ, Ma J, Zhao G, Perilla JR, Schulten K, Zhang P
    3D view:

    PDB-3ja9: Structure of native human PCNA
    Method: single particle / : Lau WCY, Li Y, Zhang Q, Huen MSY
    3D view:

    PDB-5a31: Structure of the human APC-Cdh1-Hsl1-UbcH10 complex.
    Method: single particle / : Chang L, Zhang Z, Yang J, Mclaughlin SH, Barford D
    3D view:

    PDB-3jb6: In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
    Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH
    3D view:

    PDB-3jb7: In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
    Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH
    3D view:

    PDB-3jbl: Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization
    Method: single particle / : Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H
    3D view:

    PDB-5ady: Cryo-EM structures of the 50S ribosome subunit bound with HflX
    Method: single particle / : Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N
    3D view:

    PDB-3jbq: Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6
    Method: single particle / : Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA
    3D view:

    PDB-3jak: Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 (merged dataset with and without kinesin bound)
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3jal: Cryo-EM structure of GMPCPP-microtubule co-polymerized with EB3
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3jar: Cryo-EM structure of GDP-microtubule co-polymerized with EB3
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3jas: Cryo-EM structure of dynamic GDP-microtubule (14 protofilaments) decorated with kinesin
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3jat: Cryo-EM structure of GMPCPP-microtubule (14 protofilaments) decorated with kinesin
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3jaw: Atomic model of a microtubule seam based on a cryo-EM reconstruction of the EB3-bound microtubule (merged dataset containing tubulin bound to GTPgammaS, GMPCPP, and GDP)
    Method: helical / : Zhang R, Nogales E
    3D view:

    PDB-3ja8: Cryo-EM structure of the MCM2-7 double hexamer
    Method: single particle / : Li N, Zhai Y, Zhang Y, Li W, Yang M, Lei J, Tye BK, Gao N
    3D view:

    PDB-3ja7: Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution
    Method: single particle / : Sun L, Zhang X, Gao S, Rao PA, Padilla-Sanchez V, Chen Z, Sun S, Xiang Y, Subramaniam S, Rao VB, Rossmann MG
    3D view:

    PDB-4ui9: Atomic structure of the human Anaphase-Promoting Complex
    Method: single particle / : Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D
    3D view:

    PDB-3jab: Domain organization and conformational plasticity of the G protein effector, PDE6
    Method: single particle / : Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA
    3D view:

    PDB-5afu: Cryo-EM structure of dynein tail-dynactin-BICD2N complex
    Method: single particle / : Urnavicius L, Zhang K, Diamant AG, Motz C, Schlager MA, Yu M, Patel NA, Robinson CV, Carter AP
    3D view:

    PDB-3j8g: Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit
    Method: single particle / : Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N
    3D view:

    PDB-3j8d: Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5
    Method: icosahedral / : Zhang XZ, Sheng J, Austin SK, Hoornweg T, Smit JM, Kuhn RJ, Diamond MS, Rossmann MG
    3D view:

    PDB-3j7v: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-3j7w: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-3j7x: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-4ckg: Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
    Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F
    3D view:

    PDB-4ckh: Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
    Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F
    3D view:

    PDB-4v8m: High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
    Method: single particle / : Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J
    3D view:

    PDB-3j6e: Energy minimized average structure of Microtubules stabilized by GmpCpp
    Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E
    3D view:

    PDB-3j6f: Minimized average structure of GDP-bound dynamic microtubules
    Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E
    3D view:

    PDB-3j6g: Minimized average structure of microtubules stabilized by taxol
    Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E
    3D view:

    Pages:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more