Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing all 48 items for author: y. & liu

    PDB-5jzc: helical filament
    Method: helical / : Short J, Liu Y
    3D view:

    PDB-5jzg: CryoEM structure of the native empty particle of a human rhinovirus C
    Method: single particle / : Liu Y, Hill MG, Klose T, Chen Z, Watters KE, Jiang W, Palmenberg AC, Rossmann MG
    3D view:

    PDB-5k0u: CryoEM structure of the full virion of a human rhinovirus C
    Method: single particle / : Liu Y, Hill MG, Klose T, Chen Z, Watters KE, Jiang W, Palmenberg AC, Rossmann MG
    3D view:

    PDB-5fwk: Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
    Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA
    3D view:

    PDB-5fwl: Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
    Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA
    3D view:

    PDB-5fwm: Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
    Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA
    3D view:

    PDB-5g06: Cryo-EM structure of yeast cytoplasmic exosome
    Method: single particle / : Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW
    3D view:

    PDB-3jcu: Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
    Method: single particle / : Wei XP, Zhang XZ, Su XD, Cao P, Liu XY, Li M, Chang WR, Liu ZF
    3D view:

    PDB-5irx: Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc
    Method: single particle / : Gao Y, Cao E, Julius D, Cheng Y
    3D view:

    PDB-5irz: Structure of TRPV1 determined in lipid nanodisc
    Method: single particle / : Gao Y, Cao E, Julius D, Cheng Y
    3D view:

    PDB-5is0: Structure of TRPV1 in complex with capsazepine, determined in lipid nanodisc
    Method: single particle / : Gao Y, Cao E, Julius D, Cheng Y
    3D view:

    PDB-3jau: The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
    Method: icosahedral / : Fan C, Ye XH, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
    3D view:

    PDB-3jcd: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
    Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y
    3D view:

    PDB-3jce: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
    Method: single particle / : Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E, Wu S, Jiang T, Low J, Gao N, Qin Y
    3D view:

    PDB-5an8: Cryo-electron microscopy structure of rabbit TRPV2 ion channel
    Method: single particle / : Zubcevic L, Herzik MAJ, Chung BC, Lander GC, Lee SY
    3D view:

    PDB-3j9p: Structure of the TRPA1 ion channel determined by electron cryo-microscopy
    Method: single particle / : Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D
    3D view:

    PDB-3j9b: Electron cryo-microscopy of an RNA polymerase
    Method: single particle / : Chang SH, Sun DP, Liang HH, Wang J, Li J, Guo L, Wang XL, Guan CC, Boruah BM, Yuan LM, Feng F, Yang MR, Wojdyla J, Wang JW, Wang MT, Wang HW, Liu YF
    3D view:

    PDB-3j8g: Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit
    Method: single particle / : Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N
    3D view:

    PDB-3j7v: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-3j7w: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-3j7x: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
    Method: icosahedral / : Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakata J, Chiu W, Serwer P, Jiang W
    3D view:

    PDB-4v6v: Tetracycline resistance protein Tet(O) bound to the ribosome
    Method: single particle / : Li W, Atkinson GC, Thakor NS, Allas U, Lu C, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J
    3D view:

    PDB-3zif: Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
    Method: single particle / : Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Ji G, Sun F, Zheng C, Zhu P
    3D view:

    PDB-3j5p: Structure of TRPV1 ion channel determined by single particle electron cryo-microscopy
    Method: single particle / : Liao M, Cao E, Julius D, Cheng Y
    3D view:

    PDB-3j5q: Structure of TRPV1 ion channel in complex with DkTx and RTX determined by single particle electron cryo-microscopy
    Method: single particle / : Liao M, Cao E, Julius D, Cheng Y
    3D view:

    PDB-3j5r: Reconstruction of TRPV1 ion channel in complex with capsaicin by single particle cryo-microscopy
    Method: single particle / : Liao M, Cao E, Julius D, Cheng Y
    3D view:

    PDB-3j1b: Cryo-EM structure of 8-fold symmetric rATcpn-alpha in apo state
    Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F
    3D view:

    PDB-3j1c: Cryo-EM structure of 9-fold symmetric rATcpn-alpha in apo state
    Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F
    3D view:

    PDB-3j1e: Cryo-EM structure of 9-fold symmetric rATcpn-beta in apo state
    Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F
    3D view:

    PDB-3j1f: Cryo-EM structure of 9-fold symmetric rATcpn-beta in ATP-binding state
    Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F
    3D view:

    PDB-3j3r: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
    Method: single particle / : Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N
    3D view:

    PDB-3j3s: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
    Method: single particle / : Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N
    3D view:

    PDB-3j3t: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
    Method: single particle / : Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N
    3D view:

    PDB-3j3u: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
    Method: single particle / : Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N
    3D view:

    PDB-3j1p: Atomic model of rabbit hemorrhagic disease virus
    Method: icosahedral / : Wang X, Liu Y, Sun F
    3D view:

    PDB-2ykr: 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
    Method: single particle / : Guo Q, Yuan Y, Xu Y, Feng B, Liu L, Chen K, Lei J, Gao N
    3D view:

    PDB-3j0c: Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map
    Method: icosahedral / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W
    3D view:

    PDB-2w4v: Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
    Method: electron tomography / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4g: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK STRETCH STEP
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4h: Isometrically contracting insect asynchronous flight muscle quick frozen after a quick release step
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4u: Isometrically contracting insect asynchronous flight muscle quick frozen after a length step
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4w: Isometrically contracting insect asynchronous flight muscle quick frozen after a quick stretch step
    Method: electron tomography / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w49: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4a: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-2w4t: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
    Method: helical / : Wu S, Liu J, Reedy MC, Tregear RT, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Goldman YE, Reedy MK, Taylor KA
    3D view:

    PDB-3c91: Thermoplasma acidophilum 20S proteasome with an open gate
    Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y
    3D view:

    PDB-3c92: Thermoplasma acidophilum 20S proteasome with a closed gate
    Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y
    3D view:

    PDB-2o0f: Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3
    Method: single particle / : Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, Wang C, Liu Y, Zavialov A, Gursky R, Sanyal S, Ehrenberg M, Frank J, Song H
    3D view:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more