[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for author: x. & yu

PDB-5h37:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Method: single particle / : Zhang S, Kostyuchenko V, Ng TS, Lim XN, Ooi JSG, Lambert S, Tan TY, Widman D, Shi J, Baric RS, Lok SM

PDB-5kua:
Cryo-EM reconstruction of Neisseria meningitidis Type IV pilus
Method: helical / : Kolappan S, Coureuil M, Yu X, Nassif X, Craig L, Egelman EH

PDB-5gka:
cryo-EM structure of human Aichi virus
Method: single particle / : Zhu L, Wang XX, Ren JS, Tuthill TJ, Fry EE, Rao ZH, Stuart DI

PDB-5gqh:
Cryo-EM structure of PaeCas3-AcrF3 complex
Method: single particle / : Zhang X, Ma J, Wang Y, Wang J

PDB-5j8v:
Structure of rabbit ryanodine receptor RyR1 open state activated by calcium ion
Method: single particle / : Wang X, Wei R, Yin C, Sun F

PDB-3jb8:
Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by Single Particle Analysis
Method: single particle / : Wang CY, Zhang QF, Gao YZ, Zhou XP, Ji G, Huang XJ, Hong J, Zhang CX

PDB-5jnx:
The 6.6 A cryo-EM structure of the full-length human NPC1 in complex with the cleaved glycoprotein of Ebola virus
Method: single particle / : Gong X, Qian HW, Zhou XH, Wu JP, Wan T, Shi Y, Gao F, Zhou Q, Yan N

PDB-3jct:
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N

PDB-3jd8:
cryo-EM structure of the full-length human NPC1 at 4.4 angstrom
Method: single particle / : Gong X, Qian HW, Zhou XH, Wu JP, Zhou Q, Yan N

PDB-5jb1:
Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Method: single particle / : Li ZH, Yan XD, Yu H, Zheng QB, Gu Y, Li SW

PDB-3j9d:
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Method: icosahedral / : Zhang X, Patel A, Celma C, Roy P, Zhou ZH

PDB-3j9e:
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Method: icosahedral / : Zhang X, Patel A, Celma C, Roy P, Zhou ZH

PDB-3jbt:
Atomic structure of the Apaf-1 apoptosome
Method: single particle / : Zhou M, Li Y, Hu Q, Bai X, Huang W, Yan C, Scheres SHW, Shi Y

PDB-5fj5:
Structure of the in vitro assembled bacteriophage phi6 polymerase complex
Method: single particle / : Ilca S, Kotecha A, Sun X, Poranen MP, Stuart DI, Huiskonen JT

PDB-5fj6:
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex
Method: single particle / : Ilca S, Kotecha A, Sun X, Poranen MP, Stuart DI, Huiskonen JT

PDB-5fj7:
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex, with P1 included
Method: single particle / : Ilca S, Kotecha A, Sun X, Poranen MP, Stuart DI, Huiskonen JT

PDB-3jb6:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3jb7:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3jay:
Atomic model of transcribing cytoplasmic polyhedrosis virus
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jaz:
Atomic model of cytoplasmic polyhedrosis virus with ATP
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb0:
Atomic model of cytoplasmic polyhedrosis virus with GTP
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb1:
Atomic model of cytoplasmic polyhedrosis virus with SAM
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb2:
Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb3:
Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Method: icosahedral / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-5a2t:
The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses
Method: helical / : DiMaio F, Chen CC, Yu X, Frenz B, Hsu YH, Lin NS, Egelman EH

PDB-4uif:
Cryo-EM structure of Dengue virus serotype 2 in complex with antigen- binding fragments of human antibody 2D22
Method: single particle / : Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JSG, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe Junior JE, Lok SM

PDB-4uih:
Cryo-EM structure of Dengue virus serotype 2 strain New Guinea-C complexed with human antibody 2D22 Fab at 37 degree C. The Fab molecules were added to the virus before 37 degree C incubation.
Method: single particle / : Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JSG, Kostyuchenko VA, Wang J, deSilva AM, Harris E, Crowe JE, Lok SM

PDB-5a1z:
Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C
Method: single particle / : Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JSG, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe Jr JE, Lok SM

PDB-4uis:
The cryoEM structure of human gamma-Secretase complex
Method: single particle / : Sun L, Zhao L, Yang G, Yan C, Zhou R, Zhou X, Xie T, Zhao Y, Wu S, Li X, Shi Y

PDB-3j9x:
A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA
Method: helical / : DiMaio F, Yu X, Rensen E, Krupovic M, Prangishvili D, Egelman E

PDB-3j9q:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

PDB-3j9r:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

PDB-3j9k:
Structure of Dark apoptosome in complex with Dronc CARD domain
Method: single particle / : Pang Y, Bai X, Yan C, Hao Q, Chen Z, Wang J, Scheres SHW, Shi Y

PDB-3j9l:
Structure of Dark apoptosome from Drosophila melanogaster
Method: single particle / : Pang Y, Bai X, Yan C, Hao Q, Chen Z, Wang J, Scheres SHW, Shi Y

PDB-3j9b:
Electron cryo-microscopy of an RNA polymerase
Method: single particle / : Chang SH, Sun DP, Liang HH, Wang J, Li J, Guo L, Wang XL, Guan CC, Boruah BM, Yuan LM, Feng F, Yang MR, Wojdyla J, Wang JW, Wang MT, Wang HW, Liu YF

PDB-3j89:
Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
Method: helical / : Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP

PDB-3j9a:
Backbone model of the smallest capsid protein (SCP) of Kaposi's sarcoma-associated herpesvirus (KSHV)
Method: icosahedral / : Dai X, Gong D, Xiao Y, Wu TT, Sun R, Zhou H

PDB-4d3e:
Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri
Method: single particle / : Cheung M, Shen DK, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

PDB-4ckg:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4ckh:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4upc:
Structure of a extracellular domain
Method: single particle / : Lu P, Bai XC, Ma D, Xie T, Yan C, Sun L, Yang G, Zhao Y, Zhou R, Scheres SHW, Shi Y

PDB-3j6c:
Cryo-EM structure of MAVS CARD filament
Method: helical / : Xu H, He X, Zheng H, Huang LJ, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX

PDB-3j2v:
CryoEM structure of HBV core
Method: icosahedral / : Yu X, Jin L, Jih J, Shih C, Zhou ZH

PDB-3j1b:
Cryo-EM structure of 8-fold symmetric rATcpn-alpha in apo state
Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F

PDB-3j1c:
Cryo-EM structure of 9-fold symmetric rATcpn-alpha in apo state
Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F

PDB-3j1e:
Cryo-EM structure of 9-fold symmetric rATcpn-beta in apo state
Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F

PDB-3j1f:
Cryo-EM structure of 9-fold symmetric rATcpn-beta in ATP-binding state
Method: single particle / : Zhang K, Wang L, Liu YX, Wang X, Gao B, Hu ZJ, Ji G, Chan KY, Schulten K, Dong ZY, Sun F

PDB-3j4f:
Structure of HIV-1 capsid protein by cryo-EM
Method: helical / : Zhao G, Perilla JR, Meng X, Schulten K, Zhang P

PDB-3j34:
Structure of HIV-1 Capsid Protein by Cryo-EM
Method: helical / : Zhao G, Perilla JR, Yufenyuy E, Meng X, Chen B, Ning J, Ahn J, Gronenborn AM, Schulten K, Aiken C, Zhang P

PDB-3j1p:
Atomic model of rabbit hemorrhagic disease virus
Method: icosahedral / : Wang X, Liu Y, Sun F

Pages:

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more