Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing all 22 items for author: v. & bowman

    PDB-3j2m: The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail
    Method: single particle / : Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk A, Arisaka F, Rao VB, Rossmann MG
    3D view:

    PDB-3j2n: The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail
    Method: single particle / : Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk A, Arisaka F, Rao VB, Rossmann MG
    3D view:

    PDB-3j2o: Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers
    Method: single particle / : Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk AA, Arisaka F, Rao VB, Rossmann MG
    3D view:

    PDB-3iyp: The Interaction of Decay-accelerating Factor with Echovirus 7
    Method: icosahedral / : Plevka P, Hafenstein S, Zhang Y, Harris KG, Cifuente JO, Bowman VD, Chipman PR, Lin F, Medof DE, Bator CM, Rossmann MG
    3D view:

    PDB-3iy0: Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy1: Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy2: Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy3: Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy4: Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy5: Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy6: Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3iy7: Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex
    Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
    3D view:

    PDB-3epc: CryoEM structure of poliovirus receptor bound to poliovirus type 1
    Method: icosahedral / : Zhang P, Mueller S, Morais MC, Bator CM, Bowman VD, Hafenstein S, Wimmer E, Rossmann MG
    3D view:

    PDB-3epd: CryoEM structure of poliovirus receptor bound to poliovirus type 3
    Method: icosahedral / : Zhang P, Mueller S, Morais MC, Bator CM, Bowman VD, Hafenstein S, Wimmer E, Rossmann MG
    3D view:

    PDB-3epf: CryoEM structure of poliovirus receptor bound to poliovirus type 2
    Method: icosahedral / : Zhang P, Mueller S, Morais MC, Bator CM, Bowman VD, Hafenstein S, Wimmer E, Rossmann MG
    3D view:

    PDB-2qzd: Fitted structure of SCR4 of DAF into cryoEM density
    Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG
    3D view:

    PDB-2qzf: SCR1 of DAF from 1ojv fitted into cryoEM density
    Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG
    3D view:

    PDB-2qzh: SCR2/3 of DAF from the NMR structure 1nwv fitted into a cryoEM reconstruction of CVB3-RD complexed with DAF
    Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG
    3D view:

    PDB-2nsu: Crystal structure of the ectodomain of human transferrin receptor fitted into a cryo-EM reconstruction of canine parvovirus and feline transferrin receptor complex
    Method: single particle / : Hafenstein S, Kostyuchenko VA, Rossmann MG
    3D view:

    PDB-1nn8: CryoEM structure of poliovirus receptor bound to poliovirus
    Method: icosahedral / : He Y, Mueller S, Chipman PR, Bator CM, Peng X, Bowman VD, Mukhopadhyay S, Wimmer E, Kuhn RJ, Rossmann MG
    3D view:

    PDB-1m0f: Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
    Method: icosahedral / : Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker TS, Fane BA, Rossmann MG
    3D view:

    PDB-1dgi: Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155
    Method: icosahedral / : He Y, Bowman VD, Mueller S, Bator CM, Bella J, Peng X, Baker TS, Wimmer E, Kuhn RJ, Rossmann MG
    3D view:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more