Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing all 9 items for author: t. & yokoyama

    PDB-5hnw: Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the AMPPNP state
    Method: helical / : Shigematsu H, Yokoyama T, Kikkawa M, Shirouzu M, Nitta R
    3D view:

    PDB-5hnx: Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the nucleotide-free state
    Method: helical / : Shigematsu H, Yokoyama T, Kikkawa M, Shirouzu M, Nitta R
    3D view:

    PDB-5hny: Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the AMPPNP state
    Method: helical / : Shigematsu H, Yokoyama T, Kikkawa M, Shirouzu M, Nitta R
    3D view:

    PDB-5hnz: Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the nucleotide-free state
    Method: helical / : Shigematsu H, Yokoyama T, Kikkawa M, Shirouzu M, Nitta R
    3D view:

    PDB-3j0d: Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex
    Method: single particle / : Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A, Agrawal RK
    3D view:

    PDB-3j0e: Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex
    Method: single particle / : Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A, Agrawal RK
    3D view:

    PDB-2r1c: Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
    Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK
    3D view:

    PDB-2r1g: Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
    Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK
    3D view:

    PDB-2om7: Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors
    Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT
    3D view:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more