[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: souza & v)

EMDB-16120:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16121:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16122:
Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16123:
Cryo-EM structure of the wild-type solitary ECF module in DDM micelles in the ATPase open and nucleotide-free conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16124:
Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

PDB-8bmp:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

PDB-8bmq:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

PDB-8bmr:
Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

PDB-8bms:
Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-24075:
Cryo-EM structure of NTD-directed neutralizing antibody LP5 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Reddem ER, Casner RG, Shapiro L

PDB-7mxp:
Cryo-EM structure of NTD-directed neutralizing antibody LP5 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Reddem ER, Casner RG, Shapiro L

EMDB-14179:
HeLa cell expressing NSP3, NSP4 and NSP6 of SARS-CoV-2
Method: electron tomography / : Polishchuk R

EMDB-11468:
C11 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11469:
C12 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11470:
C13 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11478:
C14 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11481:
C15 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11482:
C16 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-11483:
C17 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zvr:
C11 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zvs:
C12 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zvt:
C13 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zw4:
C14 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zw5:
C15 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu JW, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zw6:
C16 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

PDB-6zw7:
C17 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Method: single particle / : Liu J, Tassinari M, Souza DP, Naskar S, Noel JK, Bohuszewicz O, Buck M, Williams TA, Baum B, Low HH

EMDB-23016:
Cryo-EM structure of prefusion SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab
Method: single particle / : Cerutti G, Shapiro L

EMDB-23039:
Cryo-EM map of SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab (disrupted form)
Method: single particle / : Cerutti G, Shapiro L

PDB-7ks9:
Cryo-EM structure of prefusion SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab
Method: single particle / : Cerutti G, Shapiro L

EMDB-22161:
Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (RBDs down)
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

EMDB-22162:
Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (1 RBD up)
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

PDB-6xf5:
Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (RBDs down)
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

PDB-6xf6:
Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (1 RBD up)
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

EMDB-22296:
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Method: single particle / : Zhang K, Zheludev I

EMDB-22297:
Nanostructure of Frameshift Stimulation Element Tagged by ATP-TTR3
Method: single particle / : Zhang K, Zheludev I, Hagey R, Wu M, Haslecker R, Hou Y, Kretsch R, Pintilie G, Rangan R, Kladwang W, Li S, Pham E, Souibgui C, Baric R, Sheahan T, Souza V, Glenn J, Chiu W, Das R

PDB-6xrz:
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Method: single particle / : Zhang K, Zheludev I, Hagey R, Wu M, Haslecker R, Hou Y, Kretsch R, Pintilie G, Rangan R, Kladwang W, Li S, Pham E, Souibgui C, Baric R, Sheahan T, Souza V, Glenn J, Chiu W, Das R

EMDB-0089:
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri
Method: single particle / : Costa TRD, Sgro GG, Farah CS, Waksman G

PDB-6gyb:
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri
Method: single particle / : Sgro GG, Costa TRD, Farah CS, Waksman G

EMDB-4371:
Cryo-EM map of the FCHSD2 F-BAR domain + SH3-1
Method: single particle / : Almeida-Souza L, Frank R, Garcia-Nafria J, Colussi A, Gunawardana N, Johnson CM, Yu M, Howard G, Andrews B, Vallis Y, McMahon HT

EMDB-1806:
Cryo-electron tomography derived density map of a conserved retroviral RNA packaging element from Moloney Murine Leukemia Virus.
Method: subtomogram averaging / : Miyazaki Y, Irobalieva RN, Tolbert B, Smalls-Mantey A, Iyalla K, Loeliger K, DSouza V, Khant H, Schmid MF, Garcia E, Telesnitsky A, Chiu W, Summers MF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more