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Showing 1 - 50 of 52 items for author: s. & r. & ji

PDB-5h37:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Method: single particle / : Zhang S, Kostyuchenko V, Ng TS, Lim XN, Ooi JSG, Lambert S, Tan TY, Widman D, Shi J, Baric RS, Lok SM

PDB-3jbm:
Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus
Method: icosahedral / : Xie J, Li K, Gao Y, Huang R, Lai Y, Shi Y, Yang S, Zhu G, Zhang Q, He J

PDB-5t5h:
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Method: single particle / : Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford Jr JL, Tong L, Frank J

PDB-5g06:
Cryo-EM structure of yeast cytoplasmic exosome
Method: single particle / : Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW

PDB-3jct:
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N

PDB-5imq:
Structure of ribosome bound to cofactor at 3.8 angstrom resolution
Method: single particle / : Kumar V, Ero R, Jian GK, Ahmed T, Zhan Y, Bhushan S, Gao YG

PDB-5imr:
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Method: single particle / : Kumar V, Ero R, Jian GK, Ahmed T, Zhan Y, Bhushan S, Gao YG

PDB-5g2x:
Structure a of Group II Intron Complexed with its Reverse Transcriptase
Method: single particle / : Qu G, Kaushal PS, Wang J, Shigematsu H, Piazza CL, Agrawal RK, Belfort M, Wang HW

PDB-5g2y:
Structure a of Group II Intron Complexed with its Reverse Transcriptase
Method: single particle / : Qu G, Kaushal PS, Wang J, Shigematsu H, Piazza CL, Agrawal RK, Belfort M, Wang HW

PDB-5iou:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine-bound conformation
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5iov:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine/Ro25-6981-bound conformation
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ipq:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 2
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ipr:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 3
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ips:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 4
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ipt:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 5
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ipu:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 6
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, Mchaourab SH, Gouaux E

PDB-5ipv:
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 1
Method: single particle / : Zhu S, Stein AR, Yoshioka C, Lee CH, Goehring A, McHaourab SH, Gouaux E

PDB-3jbh:
TWO HEAVY MEROMYOSIN INTERACTING-HEADS MOTIFS FLEXIBLE DOCKED INTO TARANTULA THICK FILAMENT 3D-MAP ALLOWS IN DEPTH STUDY OF INTRA- AND INTERMOLECULAR INTERACTIONS
Method: helical / : Alamo L, Qi D, Wriggers W, Pinto A, Zhu J, Bilbao A, Gillilan RE, Hu S, Padron R

PDB-5any:
Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab CHK265
Method: single particle / : Fox JM, Long F, Edeling MA, Lin H, Duijl-Richter M, Fong RH, Kahle KM, Smit JM, Jin J, Simmons G, Doranz BJ, Crowe JE, Fremont DH, Rossmann MG, Diamond MS

PDB-3jba:
The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Method: icosahedral / : Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Christensen ND, Hafenstein S

PDB-5ac9:
Structure-based energetics of protein interfaces guide Foot-and-Mouth disease virus vaccine design
Method: single particle / : Kotecha A, Seago J, Scott K, Burman A, Loureiro S, Ren J, Porta C, Ginn HM, Jackson T, PerezMartin E, Siebert CA, Paul G, Huiskonen JT, Jones IM, Esnouf RM, Fry EE, Maree FF, Charleston B, Stuart DI

PDB-5aca:
Structure-based energetics of protein interfaces guide Foot-and-Mouth disease virus vaccine design
Method: single particle / : Kotecha A, Seago J, Scott K, Burman A, Loureiro S, Ren J, Porta C, Ginn HM, Jackson T, Perez-Martin E, Siebert CA, Paul G, Huiskonen JT, Jones IM, Esnouf RM, Fry EE, Maree FF, Charleston B, Stuart DI

PDB-4znn:
MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56
Method: electron crystallography / : Rodriguez JA, Ivanova M, Sawaya MR, Cascio D, Reyes F, Shi D, Johnson L, Guenther E, Sangwan S, Hattne J, Nannenga B, Brewster AS, Messerschmidt M, Boutet S, Sauter NK, Gonen T, Eisenberg DS

PDB-4ril:
Structure of the amyloid forming segment, GAVVTGVTAVA, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 68-78, determined by electron diffraction
Method: electron crystallography / : Rodriguez JA, Ivanova M, Sawaya MR, Cascio D, Reyes F, Shi D, Johnson L, Guenther E, Sangwan S, Hattne J, Nannenga B, Brewster AS, Messerschmidt M, Boutet S, Sauter NK, Gonen T, Eisenberg DS

PDB-4uis:
The cryoEM structure of human gamma-Secretase complex
Method: single particle / : Sun L, Zhao L, Yang G, Yan C, Zhou R, Zhou X, Xie T, Zhao Y, Wu S, Li X, Shi Y

PDB-3j6h:
Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule
Method: single particle / : Morikawa M, Yajima H, Nitta R, Inoue S, Ogura T, Sato C, Hirokawa N

PDB-3j9b:
Electron cryo-microscopy of an RNA polymerase
Method: single particle / : Chang SH, Sun DP, Liang HH, Wang J, Li J, Guo L, Wang XL, Guan CC, Boruah BM, Yuan LM, Feng F, Yang MR, Wojdyla J, Wang JW, Wang MT, Wang HW, Liu YF

PDB-3j92:
Structure and assembly pathway of the ribosome quality control complex
Method: single particle / : Shao S, Brown A, Santhanam B, Hegde RS

PDB-3j6p:
Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Method: helical / : Uchimura S, Fujii T, Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E

PDB-4v8m:
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Method: single particle / : Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J

PDB-4c2i:
Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4
Method: single particle / : Fibriansah G, Tan JL, de Alwis R, Smith SA, Ng TS, Kostyuchenko VA, Ibarra KD, Harris E, de Silva A, Crowe Junior JE, Lok SM

PDB-3j1z:
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Method: helical / : Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL, Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)

PDB-3j0f:
Sindbis virion
Method: icosahedral / : Tang J, Jose J, Zhang W, Chipman P, Kuhn RJ, Baker TS

PDB-3izh:
Mm-cpn D386A with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izi:
Mm-cpn rls with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izj:
Mm-cpn rls with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izk:
Mm-cpn rls deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izl:
Mm-cpn rls deltalid with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izm:
Mm-cpn wildtype with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izn:
Mm-cpn deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3iyo:
Cryo-EM model of virion-sized HEV virion-sized capsid
Method: icosahedral / : Xing L, Mayazaki N, Li TC, Simons MN, Wall JS, Moore M, Wang CY, Takeda N, Wakita T, Miyamura T, Cheng RH

PDB-3iym:
Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling
Method: icosahedral / : Tang J, Pan J, Havens WF, Ochoa WF, Li H, Sinkovits RS, Guu TSY, Ghabrial SA, Nibert ML, Tao JY, Baker TS

PDB-3los:
Atomic Model of Mm-cpn in the Closed State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-3iyf:
Atomic Model of the Lidless Mm-cpn in the Open State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-2wvw:
Cryo-EM structure of the RbcL-RbcX complex
Method: single particle / : Liu C, Young AL, Starling-Windhof A, Bracher A, Saschenbrecker S, Rao BV, Rao KV, Berninghausen O, Mielke T, Hartl FU, Beckmann R, Hayer-Hartl M

PDB-1zc8:
Coordinates of tmRNA, SmpB, EF-Tu and h44 fitted into Cryo-EM map of the 70S ribosome and tmRNA complex
Method: single particle / : Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J

PDB-1pdf:
Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdi:
Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdj:
Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdl:
Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

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