Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing all 21 items for author: s. & h. & sim

    PDB-5any: Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab CHK265
    Method: single particle / : Fox JM, Long F, Edeling MA, Lin H, Duijl-Richter M, Fong RH, Kahle KM, Smit JM, Jin J, Simmons G, Doranz BJ, Crowe JE, Fremont DH, Rossmann MG, Diamond MS
    3D view:

    PDB-5ahv: Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes
    Method: single particle / : Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJH, Schulz J, Meijers R, Rybin V, Briggs JAG, Sachse C, Kaksonen M
    3D view:

    PDB-4udv: Cryo-EM structure of TMV at 3.35 A resolution
    Method: helical / : Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C
    3D view:

    PDB-4chv: The electron crystallography structure of the cAMP-bound potassium channel MloK1
    Method: electron crystallography / : Kowal J, Chami M, Baumgartner P, Arheit M, Chiu PL, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H
    3D view:

    PDB-4chw: The electron crystallography structure of the cAMP-free potassium channel MloK1
    Method: electron crystallography / : Kowal J, Chami M, Baumgartner P, Arheit M, Chiu PL, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H
    3D view:

    PDB-2m5k: Atomic-resolution structure of a doublet cross-beta amyloid fibril
    Method: single particle / : Fitzpatrick AWP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller S, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM
    3D view:

    PDB-2m5m: Atomic-resolution structure of a triplet cross-beta amyloid fibril
    Method: single particle / : Fitzpatrick AWP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller S, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM
    3D view:

    PDB-3zpk: Atomic-resolution structure of a quadruplet cross-beta amyloid fibril
    Method: single particle / : Fitzpatrick AwP, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Muller SA, MacPhee CE, Waudby CA, Mott HR, de Simone A, Knowles TPJ, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM
    3D view:

    PDB-3j28: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j29: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2a: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2b: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2c: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2d: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2e: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2f: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2g: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-3j2h: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
    Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N
    3D view:

    PDB-4a5q: Crystal structure of the chitinase Chi1 fitted into the 3D structure of the Yersinia entomophaga toxin complex
    Method: single particle / : Busby JN, Landsberg MJ, Simpson RM, Jones SA, Hankamer B, Hurst MRH, Lott JS
    3D view:

    PDB-3iyo: Cryo-EM model of virion-sized HEV virion-sized capsid
    Method: icosahedral / : Xing L, Mayazaki N, Li TC, Simons MN, Wall JS, Moore M, Wang CY, Takeda N, Wakita T, Miyamura T, Cheng RH
    3D view:

    PDB-1foq: PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
    Method: single particle / : Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG
    3D view:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more