[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 41 items for author: paul & r. & chipman

PDB-5ipi:
Structure of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-5ipk:
Structure of the R432A variant of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-3j0b:
cryo-EM reconstruction of West Nile virus
Method: icosahedral / : Zhang W, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

PDB-3j0f:
Sindbis virion
Method: icosahedral / : Tang J, Jose J, Zhang W, Chipman P, Kuhn RJ, Baker TS

PDB-3iyp:
The Interaction of Decay-accelerating Factor with Echovirus 7
Method: icosahedral / : Plevka P, Hafenstein S, Zhang Y, Harris KG, Cifuente JO, Bowman VD, Chipman PR, Lin F, Medof DE, Bator CM, Rossmann MG

PDB-3ixx:
The pseudo-atomic structure of West Nile immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Method: icosahedral / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

PDB-3ixy:
The pseudo-atomic structure of dengue immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Method: icosahedral / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

PDB-3iy0:
Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy1:
Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy2:
Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy3:
Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy4:
Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy5:
Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy6:
Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy7:
Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex
Method: icosahedral / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3c6r:
Low pH Immature Dengue Virus
Method: icosahedral / : Yu I, Zhang W, Holdway HA, Li L, Kostyuchenko VA, Chipman PR, Kuhn RJ, Rossmann MG, Chen J

PDB-2r6p:
Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue 2 virus.
Method: icosahedral / : Lok SM, Kostyuchenko VK, Holdaway HA, Chipman PR, Kuhn RJ, Rossmann MG

PDB-2qzd:
Fitted structure of SCR4 of DAF into cryoEM density
Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG

PDB-2qzf:
SCR1 of DAF from 1ojv fitted into cryoEM density
Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG

PDB-2qzh:
SCR2/3 of DAF from the NMR structure 1nwv fitted into a cryoEM reconstruction of CVB3-RD complexed with DAF
Method: icosahedral / : Hafenstein S, Bowman VD, Chipman PR, Bator Kelly CM, Lin F, Medof ME, Rossmann MG

PDB-2of6:
Structure of immature West Nile virus
Method: icosahedral / : Zhang Y, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

PDB-2b6b:
Cryo EM structure of Dengue complexed with CRD of DC-SIGN
Method: icosahedral / : Pokidysheva E, Zhang Y, Battisti AJ, Bator-Kelly CM, Chipman PR, Gregorio G, Hendrickson WA, Kuhn RJ, Rossmann MG

PDB-1z8y:
Mapping the E2 Glycoprotein of Alphaviruses
Method: icosahedral / : Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

PDB-2bsg:
The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4
Method: helical / : Kostyuchenko VA, Chipman PR, Leiman PG, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1z7z:
Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi
Method: icosahedral / : Xiao C, Bator-Kelly CM, Rieder E, Chipman PR, Craig A, Kuhn RJ, Wimmer E, Rossmann MG

PDB-1yxn:
Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29
Method: icosahedral / : Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG

PDB-1tja:
Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
Method: single particle / : Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

PDB-1nn8:
CryoEM structure of poliovirus receptor bound to poliovirus
Method: icosahedral / : He Y, Mueller S, Chipman PR, Bator CM, Peng X, Bowman VD, Mukhopadhyay S, Wimmer E, Kuhn RJ, Rossmann MG

PDB-1na4:
The structure of immature Yellow Fever virus particle
Method: icosahedral / : Zhang Y, Corver J, Chipman PR, Lenches E, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1uon:
REOVIRUS POLYMERASE LAMBDA-3 LOCALIZED BY ELECTRON CRYOMICROSCOPY OF VIRIONS AT 7.6-A RESOLUTION
Method: icosahedral / : Zhang X, Walker SB, Chipman PR, Nibert ML, Baker TS

PDB-1p58:
Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction
Method: icosahedral / : Zhang W, Chipman PR, Corver J, Johnson PR, Zhang Y, Mukhopadhyay S, Baker TS, Strauss JH, Rossmann MG, Kuhn RJ

PDB-1pdf:
Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdi:
Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdj:
Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdl:
Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdm:
Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1pdp:
Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

PDB-1n6g:
The structure of immature Dengue-2 prM particles
Method: icosahedral / : Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG

PDB-1m0f:
Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
Method: icosahedral / : Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker TS, Fane BA, Rossmann MG

PDB-1m11:
structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy
Method: icosahedral / : He Y, Lin F, Chipman PR, Bator CM, Baker TS, Shoham M, Kuhn RJ, Medof ME, Rossmann MG

PDB-1k4r:
Structure of Dengue Virus
Method: icosahedral / : Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more