[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 35 items for author: o. & berninghausen

PDB-5mc6:
Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
Method: single particle / : Schmidt C, Kowalinski E, Shanmuganathan V, Defenouillere Q, Braunger K, Heuer A, Pech M, Namane A, Berninghausen O, Fromont-Racine M, Jacquier A, Conti E, Becker T, Beckmann R

PDB-5m5h:
RIBOSOME-BOUND YIDC INSERTASE
Method: single particle / : Kedrov A, Wickles S, Crevenna AH, van der Sluis E, Buschauer R, Berninghausen O, Lamb DC, Beckmann R

PDB-5mgp:
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Method: single particle / : Huter P, Mueller C, Beckert B, Arenz S, Berninghausen O, Beckmann R, Wilson ND

PDB-5jcs:
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Method: single particle / : Barrio-Garcia C, Thoms M, Flemming D, Kater L, Berninghausen O, Bassler J, Beckmann R, Hurt E

PDB-5jpq:
Cryo-EM structure of the 90S pre-ribosome
Method: single particle / : Turk M, Cheng J, Berninghausen O, Kornprobst M, Flemming D, Kos-Braun IC, Kos M, Thoms M, Hurt E, Beckmann R

PDB-4urd:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

PDB-5a8l:
Human eRF1 and the hCMV nascent peptide in the translation termination complex
Method: single particle / : Matheisl S, Berninghausen O, Becker T, Beckmann R

PDB-5fl8:
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Method: single particle / : BARRIO-GARCIA C, THOMS M, FLEMMING D, KATER L, BERNINGHAUSEN O, BASSLER J, BECKMANN R, HURT E

PDB-5abb:
Visualization of a polytopic membrane protein during SecY-mediated membrane insertion
Method: single particle / : Bischoff L, Wickles S, Berninghausen O, vanderSluis E, Beckmann R

PDB-3j9w:
Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Method: single particle / : Sohmen D, Chiba S, Shimokawa-Chiba N, Innis CA, Berninghausen O, Beckmann R, Ito K, Wilson DN

PDB-4uy8:
Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
Method: single particle / : Bischoff L, Berninghausen O, Beckmann R

PDB-3j7z:
Structure of the E. coli 50S subunit with ErmCL nascent chain
Method: single particle / : Arenz S, Meydan S, Starosta AL, Berninghausen O, Beckmann R, Vazquez-Laslop N, Wilson DN

PDB-4utq:
A structural model of the active ribosome-bound membrane protein insertase YidC
Method: single particle / : Wickles S, Singharoy A, Andreani J, Seemayer S, Bischoff L, Berninghausen O, Soeding J, Schulten K, vanderSluis EO, Beckmann R

PDB-4crm:
Cryo-EM of a pre-recycling complex with eRF1 and ABCE1
Method: single particle / : Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler D, Berninghausen O, Green R, Becker T, Beckmann R

PDB-4crn:
Cryo-EM of a pretermination complex with eRF1 and eRF3
Method: single particle / : Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler D, Berninghausen O, Green R, Becker T, Beckmann R

PDB-4v6i:
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-4v6m:
Structure of the ribosome-SecYE complex in the membrane environment
Method: single particle / : Frauenfeld J, Gumbart J, van der Sluis EO, Funes S, Gartmann M, Beatrix B, Mielke T, Berninghausen O, Becker T, Schulten K, Beckmann R

PDB-4v6u:
Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes
Method: single particle / : Armache JP, Anger AM, Marquez V, Frankenberg S, Froehlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN

PDB-4v6w:
Structure of the D. melanogaster 80S ribosome
Method: single particle / : Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R

PDB-4v6x:
Structure of the human 80S ribosome
Method: single particle / : Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R

PDB-4v7e:
Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Method: single particle / : Barrio-Garcia C, Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-4v7f:
Arx1 pre-60S particle.
Method: single particle / : Leidig C, Thoms M, Holdermann I, Bradatsch B, Berninghausen O, Bange G, Sinning I, Hurt E, Beckmann R

PDB-3j5l:
Structure of the E. coli 50S subunit with ErmBL nascent chain
Method: single particle / : Arenz S, Ramu H, Gupta P, Berninghausen O, Beckmann R, Vazquez-Laslop N, Mankin AS, Wilson DN

PDB-4cg5:
Cryo-EM of the Sec61-complex bound to the 80S ribosome translating a secretory substrate
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-4cg6:
Cryo-em of the Sec61-complex bound to the 80s ribosome translating a membrane-inserting substrate
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-4cg7:
Cryo-EM of the Sec61-complex bound to the idle 80S ribosome
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-3j25:
Structural basis for TetM-mediated tetracycline resistance
Method: single particle / : Doenhoefer A, Franckenberg S, Wickles S, Berninghausen O, Beckmann R, Wilson DN

PDB-3j15:
Model of ribosome-bound archaeal Pelota and ABCE1
Method: single particle / : Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache JP, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R

PDB-3j16:
Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners
Method: single particle / : Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache JP, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R

PDB-3izq:
Structure of the Dom34-Hbs1-GDPNP complex bound to a translating ribosome
Method: single particle / : Becker T, Armache JP, Jarasch A, Anger AM, Villa E, Sieber H, Abdel Motaal B, Mielke T, Berninghausen O, Beckmann R

PDB-3izd:
Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-2wvw:
Cryo-EM structure of the RbcL-RbcX complex
Method: single particle / : Liu C, Young AL, Starling-Windhof A, Bracher A, Saschenbrecker S, Rao BV, Rao KV, Berninghausen O, Mielke T, Hartl FU, Beckmann R, Hayer-Hartl M

PDB-2ww9:
Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

PDB-2wwa:
Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

PDB-2wwb:
CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more