[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 40 items for author: n. & ban

PDB-5lzp:
Binding of the C-terminal GQYL motif of the bacterial proteasome activator Bpa to the 20S proteasome
Method: single particle / : Bolten M, Delley CL, Leibundgut M, Boehringer D, Ban N, Weber-Ban E

PDB-5l9t:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5l9u:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5ipi:
Structure of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-5ipk:
Structure of the R432A variant of Adeno-associated virus type 2 VLP
Method: single particle / : Drouin LM, Lins B, Janssen ME, Bennet A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M

PDB-5gaf:
RNC in complex with SRP
Method: single particle / : Jomaa A, Boehringer D, Leibundgut M, Ban N

PDB-5ftj:
Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor
Method: single particle / : Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JLS, Huryn D, Arkin M, Subramaniam S

PDB-5ftk:
Cryo-EM structure of human p97 bound to ADP
Method: single particle / : Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JLS, Huryn D, Arkin M, Subramaniam S

PDB-5ftl:
Cryo-EM structure of human p97 bound to ATPgS (Conformation I)
Method: single particle / : Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JLS, Huryn D, Arkin M, Subramaniam S

PDB-5ftm:
Cryo-EM structure of human p97 bound to ATPgS (Conformation II)
Method: single particle / : Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JLS, Huryn D, Arkin M, Subramaniam S

PDB-5ftn:
Cryo-EM structure of human p97 bound to ATPgS (Conformation III)
Method: single particle / : Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JLS, Huryn D, Arkin M, Subramaniam S

PDB-5gad:
RNC-SRP-SR complex early state
Method: single particle / : Jomaa A, Boehringer D, Leibundgut M, Ban N

PDB-5gae:
RNC in complex with a translocating SecYEG
Method: single particle / : Jomaa A, Boehringer D, Leibundgut M, Ban N

PDB-5gag:
RNC in complex with SRP-SR in the closed state
Method: single particle / : Jomaa A, Boehringer D, Leibundgut M, Ban N

PDB-5gah:
RNC in complex with SRP with detached NG domain
Method: single particle / : Jomaa A, Boehringer D, Leibundgut M, Ban N

PDB-5flc:
Architecture of human mTOR Complex 1 - 5.9 Angstrom reconstruction
Method: single particle / : Aylett CHS, Sauer E, Imseng S, Boehringer D, Hall MN, Ban N, Maier T

PDB-5apn:
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Method: single particle / : Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban V

PDB-5apo:
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
Method: single particle / : Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban N

PDB-5a2q:
Structure of the HCV IRES bound to the human ribosome
Method: single particle / : Quade N, Leiundgut M, Boehringer D, Heuvel Jvd, Ban N

PDB-5aj3:
Structure of the small subunit of the mammalian mitoribosome
Method: single particle / : Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N

PDB-5aj4:
Structure of the 55S mammalian mitoribosome.
Method: single particle / : Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N

PDB-4uer:
40S-eIF1-eIF1A-eIF3-eIF3j translation initiation complex from Lachancea kluyveri
Method: single particle / : Aylett CHS, Boehringer D, Erzberger JP, Schaefer T, Ban N

PDB-3j8b:
Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map
Method: single particle / : Erzberger JP, Ban N

PDB-3j8c:
Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map
Method: single particle / : Erzberger JP, Ban N

PDB-4v19:
Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
Method: single particle / : Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N

PDB-4v1a:
Structure of the large subunit of the mammalian mitoribosome, part 2 of 2
Method: single particle / : Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N

PDB-4v8l:
Cryo-EM Structure of the Mycobacterial Fatty Acid Synthase
Method: single particle / : Boehringer D, Ban N, Leibundgut M

PDB-4v8t:
Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
Method: single particle / : Greber BJ, Boehringer D, Montellese C, Ban N

PDB-4ce4:
39S large subunit of the porcine mitochondrial ribosome
Method: single particle / : Greber BJ, Boehringer D, Leitner A, Bieri P, Voigts-Hoffmann F, Erzberger JP, Leibundgut M, Aebersold R, Ban N

PDB-3j1z:
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Method: helical / : Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL, Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)

PDB-4adv:
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Method: single particle / : Boehringer D, O'Farrell HC, Rife JP, Ban N

PDB-4adx:
The Cryo-EM Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6
Method: single particle / : Greber BJ, Boehringer D, Godinic-Mikulcic V, Crnkovic A, Ibba M, Weygand-Durasevic I, Ban N

PDB-3izz:
Models for ribosome components that are nearest neighbors to the bovine mitochondrial initiation factor2 bound to the E. Coli ribosome
Method: single particle / : Yassin AS, Haque E, Datta PP, Elmore K, Banavali NK, Spremulli LL, Agrawal RK

PDB-3izy:
Mammalian mitochondrial translation initiation factor 2
Method: single particle / : Yassin AS, Haque E, Datta PP, Elmore K, Banavali NK, Spremulli LL, Agrawal RK

PDB-2xkv:
Atomic Model of the SRP-FtsY Early Conformation
Method: single particle / : Estrozi LF, Boehringer D, Shan So, Ban N, Schaffitzel C

PDB-2vrh:
Structure of the E. coli trigger factor bound to a translating ribosome
Method: single particle / : Merz F, Boehringer D, Schaffitzel C, Preissler S, Hoffmann A, Maier T, Rutkowska A, Lozza J, Ban N, Bukau B, Deuerling E

PDB-2iy3:
Structure of the E. Coli Signal Regognition Particle
Method: single particle / : Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N

PDB-2akh:
Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra KM, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

PDB-2aki:
Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more