Movie controller

-
List

    -
    Size

    -
    Control


    Orientation:

    Jmol status

    -
    Console

    -
    Mouse picking

    ID:- Chain:- Residue:- Atom:-
    [English] 日本語
    EMN search
    - 3DEM data search -

    -
    Search query

    Keywords
    Database
    Q: What is the data source of EM Navigator?
    Latest entriesEMDB:
    PDB:
    Q: When the data are updated?
    Author
    Processing method
    Display mode
    Sort by
    Displayentries / page
    Entry
    Article
    Sample
    Experiment
    Processing

    -
    Search result

    Showing all 22 items for author: l. & cheng

    PDB-3jct: Cryo-em structure of eukaryotic pre-60S ribosomal subunits
    Method: single particle / : Wu S, Kumcuoglu B, Yan KG, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong MQ, Woolford Jr JL, Gao N
    3D view:

    PDB-3ja4: RNA-dependent RNA polymerases of transcribing cypoviruses
    Method: single particle / : Liu H, Cheng L
    3D view:

    PDB-3ja5: Genome and RdRp structure within the capsid of no-transcribing cypovirus
    Method: single particle / : Liu H, Cheng L
    3D view:

    PDB-3j9b: Electron cryo-microscopy of an RNA polymerase
    Method: single particle / : Chang SH, Sun DP, Liang HH, Wang J, Li J, Guo L, Wang XL, Guan CC, Boruah BM, Yuan LM, Feng F, Yang MR, Wojdyla J, Wang JW, Wang MT, Wang HW, Liu YF
    3D view:

    PDB-3j6q: Identification of the active sites in the methyltransferases of a transcribing dsRNA virus
    Method: single particle / : Zhu B, Yang C, Liu H, Cheng L, Song F, Zeng S, Huang X, Ji G, Zhu P
    3D view:

    PDB-3j7l: Full virus map of brome mosaic virus
    Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W
    3D view:

    PDB-3j7m: Virus model of brome mosaic virus (first half data set)
    Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W
    3D view:

    PDB-3j7n: Virus model of brome mosaic virus (second half data set)
    Method: icosahedral / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W
    3D view:

    PDB-3j6r: Electron cryo-microscopy of Human Papillomavirus Type 16 capsid
    Method: icosahedral / : Cardone G, Moyer AL, Cheng N, Thompson CD, Dvoretzky I, Lowy DR, Schiller JT, Steven AC, Buck CB, Trus BL
    3D view:

    PDB-3zif: Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
    Method: single particle / : Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Ji G, Sun F, Zheng C, Zhu P
    3D view:

    PDB-4btq: Coordinates of the bacteriophage phi6 capsid subunits fitted into the cryoEM map EMD-1206
    Method: single particle / : Nemecek D, Boura E, Wu W, Cheng N, Plevka P, Qiao J, Mindich L, Heymann JB, Hurley JH, Steven AC
    3D view:

    PDB-4btg: Coordinates of the bacteriophage phi6 capsid subunits (P1A and P1B) fitted into the cryoEM reconstruction of the procapsid at 4.4 A resolution
    Method: single particle / : Nemecek D, Boura E, Wu W, Cheng N, Plevka P, Qiao J, Mindich L, Heymann JB, Hurley JH, Steven AC
    3D view:

    PDB-3j17: Structure of a transcribing cypovirus by cryo-electron microscopy
    Method: icosahedral / : Yang C, Ji G, Liu H, Zhang K, Liu G, Sun F, Zhu P, Cheng L
    3D view:

    PDB-3iz3: CryoEM structure of cytoplasmic polyhedrosis virus
    Method: icosahedral / : Cheng L, Sun J, Zhang K, Mou Z, Huang X, Ji G, Sun F, Zhang J, Zhu P
    3D view:

    PDB-3iys: Homology model of avian polyomavirus asymmetric unit
    Method: icosahedral / : Shen PS, Enderlein D, Nelson CDS, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM
    3D view:

    PDB-3iyo: Cryo-EM model of virion-sized HEV virion-sized capsid
    Method: icosahedral / : Xing L, Mayazaki N, Li TC, Simons MN, Wall JS, Moore M, Wang CY, Takeda N, Wakita T, Miyamura T, Cheng RH
    3D view:

    PDB-3k1q: Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
    Method: icosahedral / : Cheng LP, Zhu J, Hiu WH, Zhang XK, Honig B, Fang Q, Zhou ZH
    3D view:

    PDB-3c91: Thermoplasma acidophilum 20S proteasome with an open gate
    Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y
    3D view:

    PDB-3c92: Thermoplasma acidophilum 20S proteasome with a closed gate
    Method: single particle / : Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y
    3D view:

    PDB-2o0f: Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3
    Method: single particle / : Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, Wang C, Liu Y, Zavialov A, Gursky R, Sanyal S, Ehrenberg M, Frank J, Song H
    3D view:

    PDB-2fte: Bacteriophage HK97 Expansion Intermediate IV
    Method: icosahedral / : Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE
    3D view:

    PDB-1if0: PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)
    Method: icosahedral / : Conway JF, Wikoff WR, Cheng N, Duda RL, Hendrix RW, Johnson JE, Steven AC
    3D view:

    +
    About EMN search

    -
    News

    -
    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    -
    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

    +
    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

    +
    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    +
    Dec 4, 2015. The article about Omokage search is published online

    The article about Omokage search is published online

    Related info.: Omokage search / gmfit

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

    Read more