[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 129 items for author: j. & frank

PDB-5t15:
Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles)

PDB-5t5h:
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit

PDB-5t9m:
Structure of rabbit RyR1 (Ca2+-only dataset, class 1)

PDB-5t9n:
Structure of rabbit RyR1 (Ca2+-only dataset, class 2)

PDB-5t9r:
Structure of rabbit RyR1 (Ca2+-only dataset, class 3)

PDB-5t9s:
Structure of rabbit RyR1 (Ca2+-only dataset, class 4)

PDB-5t9v:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1)

PDB-5ta3:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 2)

PDB-5tal:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1&2)

PDB-5tam:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 4)

PDB-5tan:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3)

PDB-5tap:
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, all particles)

PDB-5taq:
Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3&4)

PDB-5tas:
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 1)

PDB-5tat:
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 2)

PDB-5tau:
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 3)

PDB-5tav:
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 4)

PDB-5taw:
Structure of rabbit RyR1 (ryanodine dataset, all particles)

PDB-5tax:
Structure of rabbit RyR1 (ryanodine dataset, class 1)

PDB-5tay:
Structure of rabbit RyR1 (ryanodine dataset, class 2)

PDB-5taz:
Structure of rabbit RyR1 (ryanodine dataset, class 3)

PDB-5tb0:
Structure of rabbit RyR1 (EGTA-only dataset, all particles)

PDB-5tb1:
Structure of rabbit RyR1 (EGTA-only dataset, class 1)

PDB-5tb2:
Structure of rabbit RyR1 (EGTA-only dataset, class 2)

PDB-5tb3:
Structure of rabbit RyR1 (EGTA-only dataset, class 3)

PDB-5tb4:
Structure of rabbit RyR1 (EGTA-only dataset, class 4)

PDB-5szs:
Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy

PDB-5kgf:
Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution

PDB-5kbs:
Cryo-EM structure of GluA2-0xSTZ at 8.7 Angstrom resolution

PDB-5kbt:
Cryo-EM structure of GluA2-1xSTZ complex at 6.4 Angstrom resolution

PDB-5kbu:
Cryo-EM structure of GluA2-2xSTZ complex at 7.8 Angstrom resolution

PDB-5kbv:
Cryo-EM structure of GluA2 bound to antagonist ZK200775 at 6.8 Angstrom resolution

PDB-5a8f:
Structure and genome release mechanism of human cardiovirus Saffold virus-3

PDB-3jcl:
Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer

PDB-5flu:
Structure of a Chaperone-Usher pilus reveals the molecular basis of rod uncoilin

PDB-3jbn:
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

PDB-3jbo:
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

PDB-3jbp:
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

PDB-5a5t:
Structure of mammalian eIF3 in the context of the 43S preinitiation complex

PDB-5a5u:
Structure of mammalian eIF3 in the context of the 43S preinitiation complex

PDB-3j9j:
Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy

PDB-3j9z:
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

PDB-3ja1:
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

PDB-3j83:
Heptameric EspB Rosetta model guided by EM density

PDB-3j7v:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

PDB-3j7w:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

PDB-3j7x:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

PDB-4v47:
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome

PDB-4v48:
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome

PDB-4v4b:
Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.

Pages:

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more