[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 24 items for author: becker, & t

PDB-5gak:
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Method: single particle / : Schmidt C, Becker T

PDB-5a8l:
Human eRF1 and the hCMV nascent peptide in the translation termination complex
Method: single particle / : Matheisl S, Berninghausen O, Becker T, Beckmann R

PDB-2mme:
Hybrid structure of the Shigella flexneri MxiH Type three secretion system needle
Method: helical / : Demers JP, Habenstein B, Loquet A, Vasa SK, Becker S, Baker D, Lange A, Sgourakis NG

PDB-4crm:
Cryo-EM of a pre-recycling complex with eRF1 and ABCE1
Method: single particle / : Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler D, Berninghausen O, Green R, Becker T, Beckmann R

PDB-4crn:
Cryo-EM of a pretermination complex with eRF1 and eRF3
Method: single particle / : Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler D, Berninghausen O, Green R, Becker T, Beckmann R

PDB-4v5h:
E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
Method: single particle / : Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache J, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R

PDB-4v6i:
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-4v6m:
Structure of the ribosome-SecYE complex in the membrane environment
Method: single particle / : Frauenfeld J, Gumbart J, van der Sluis EO, Funes S, Gartmann M, Beatrix B, Mielke T, Berninghausen O, Becker T, Schulten K, Beckmann R

PDB-4v7e:
Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Method: single particle / : Barrio-Garcia C, Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-4cg5:
Cryo-EM of the Sec61-complex bound to the 80S ribosome translating a secretory substrate
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-4cg6:
Cryo-em of the Sec61-complex bound to the 80s ribosome translating a membrane-inserting substrate
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-4cg7:
Cryo-EM of the Sec61-complex bound to the idle 80S ribosome
Method: single particle / : Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R

PDB-3j15:
Model of ribosome-bound archaeal Pelota and ABCE1
Method: single particle / : Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache JP, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R

PDB-3j16:
Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners
Method: single particle / : Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache JP, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R

PDB-3izq:
Structure of the Dom34-Hbs1-GDPNP complex bound to a translating ribosome
Method: single particle / : Becker T, Armache JP, Jarasch A, Anger AM, Villa E, Sieber H, Abdel Motaal B, Mielke T, Berninghausen O, Beckmann R

PDB-3izd:
Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-2ww9:
Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

PDB-2wwa:
Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

PDB-2wwb:
CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
Method: single particle / : Becker T, Mandon E, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Beckmann R

PDB-2ix8:
MODEL FOR EEF3 BOUND TO AN 80S RIBOSOME
Method: single particle / : Andersen CBF, Becker T, Blau M, Anand M, Halic M, Balar B, Mielke T, Boesen T, Pedersen JS, Spahn CMT, Kinzy TG, Andersen GR, Beckmann R

PDB-2j28:
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Method: single particle / : Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R

PDB-2j37:
MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Method: single particle / : Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R

PDB-1ysh:
Localization and dynamic behavior of ribosomal protein L30e
Method: single particle / : Halic M, Becker T, Frank J, Spahn CM, Beckmann R

PDB-1ry1:
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
Method: single particle / : Halic M, Becker T, Pool MR, Spahn CM, Grassucci RA, Frank J, Beckmann R

+
About EMN search

-
News

-
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

-
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

+
Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

+
Dec 4, 2015. The article about Omokage search is published online

The article about Omokage search is published online

Related info.: Omokage search / gmfit

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more