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Database-ID

Resolution

Resolution Method

CTF correction

3D reconstruction Algorithm

3D reconstruction Software

EMDB-30011.4DIFFRACTION PATTERN/LAYERLINES
EMDB-30281.4DIFFRACTION PATTERN/LAYERLINES
PDB-4znn1.41
PDB-4ril1.43
EMDB-29731.9DIFFRACTION PATTERN/LAYERLINES
PDB-2b6o1.9
PDB-4a822.0
PDB-4d3e2.12MIX OF single particle, helical RECONSTRUCTION
EMDB-29842.2FSC 0.143, semi-independentEACH PARTICLEphase residual minimizationFREALIGN
PDB-5a1a2.2EACH PARTICLE
EMDB-32952.3FSC 0.143, semi-independentEACH PARTICLEscore minimizationFREALIGN
PDB-5ftj2.3EACH PARTICLESCORE MINIMIZATION
EMDB-32962.4FSC 0.143, semi-independentEACH PARTICLEscore minimizationFREALIGN
PDB-5ftk2.4EACH PARTICLESCORE MINIMIZATION
PDB-3j6k2.496
EMDB-63132.5DIFFRACTION PATTERN/LAYERLINES
EMDB-63422.5DIFFRACTION PATTERN/LAYERLINES
PDB-3m9i2.5
PDB-5a3e2.501
EMDB-62722.6FSC 0.143, semi-independentEACH PARTICLEprojection matchingTIGRIS, IMAGIC, FREALIGN
PDB-3j9s2.6FSC 0.143EACH PARTICLEprojection matchingTIGRIS, IMAGIC, FREALIGN
EMDB-62872.8FSC 0.143, gold-standardEACH PARTICLEsingle particleRelion
EMDB-64642.8FSC 0.143, semi-independentCTF parameters provided by Campbell et alTigris, Unblur, Frealign
EMDB-64702.8FSC 0.143, semi-independentby imageprojection matchingEMAN, Frealign
EMDB-65832.8FSC 0.143, gold-standardEACH PARTICLERELION
PDB-2zz92.8
EMDB-32462.8FSC 0.143Each Imagecommon lineImagic
PDB-5foj2.8EACH IMAGEcommon line
PDB-1tvk2.89
EMDB-28472.9FSC 0.143, gold-standardlocal CTF correctionHOME MADE-made, IMAGIC, Relion
EMDB-29452.9DIFFRACTION PATTERN/LAYERLINES
EMDB-62242.9FSC 0.143, gold-standardEACH PARTICLEMaximum a posteriori optimizationRELION
EMDB-64782.9FSC 0.143, gold-standardEACH PARTICLEprojection matchingFrealign
PDB-3j9c2.9FSC 0.143EACH PARTICLEMaximum a posteriori optimizationRELION
PDB-3jbs2.9FSC 0.143EACH PARTICLEprojection matchingFrealign
PDB-3jci2.9FSC 0.143EACH PARTICLEprojection matchingJSRP, EMAN
PDB-5afi2.9LOCAL CTF CORRECTION
EMDB-65552.9FSC 0.143, gold-standardEACH PARTICLEprojection matchingJSPR, EMAN
EMDB-63742.9FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
PDB-3jb02.9FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3j4g2.901
PDB-1at93.0
PDB-1sor3.0
PDB-2at93.0
EMDB-63783.0FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
PDB-3jay3.0FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-5iqr3.0FSC 0.143
EMDB-81073.0FSC 0.143Relion
EMDB-30143.04FSC 0.143, gold-standardCTFFIND3 per micrographRELION
PDB-5a333.04CTFFIND3 PER MICROGRAPH
EMDB-66153.08FSC 0.143, gold-standard
EMDB-52563.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3izx3.1FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-63713.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63753.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63763.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63773.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
PDB-3jaz3.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb13.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb23.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb33.1FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-33483.1FSC 0.143EACH FILM/CCDEMAN, Relion, CTFFIND
EMDB-80153.1FSC 0.143RELION
PDB-5gaq3.1FSC 0.143
EMDB-25663.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-26603.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-31293.2FSC 0.143, gold-standardEACH PARTICLEprojection matchingRelion
EMDB-32983.2FSC 0.143, semi-independentEACH PARTICLEscore minimizationFREALIGN
EMDB-59953.2FSC 0.143, gold-standardEACH PARTICLEphase residual minimizationFREALIGN, EMAN
EMDB-63143.2DIFFRACTION PATTERN/LAYERLINES
EMDB-65503.2FSC 0.143, gold-standard
PDB-1fbb3.2
PDB-1fbk3.2
PDB-2d573.2
PDB-2h8a3.2CrystallographicCRYSTALLOGRAPHY
PDB-3j6b3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j793.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j7a3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j7b3.2
PDB-3j7h3.2FSC 0.143EACH FILM/CCDs of each movie were aligned by cross-correlation using the cumulative average of previously aligned frames as a reference to align the remaining frames. Parameters of the contrast transfer function for EACH FILM/CCD were estimated from power spectra obtained using periodogram averaging with tiles of size 512x512 pixels extracted from all frames of each movie. These power spectra were then radially averaged and used to estimate the defocus for each image using frequencies in the 15.0-3.0 Angstrom range. CTF correction was done for EACH PARTICLE as implemented in FREALIGN's reconstruction protocolphase residual minimizationFREALIGN, EMAN
PDB-3j7u3.2home-made program
PDB-5ac93.2EACH PARTICLEprojection matching
PDB-5ftm3.2EACH PARTICLESCORE MINIMIZATION
PDB-3jce3.2
EMDB-33473.2FSC 0.143Relion
EMDB-66303.26FSC 0.143, gold-standardEACH FILM/CCDCTFFIND, EMAN, Relion
PDB-3jcz3.26EACH FILM/CCD
EMDB-28793.27FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-57783.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
PDB-3j5p3.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
EMDB-31453.3FSC 0.143, gold-standardEACH PARTICLERELION
EMDB-32973.3FSC 0.143, semi-independentEACH PARTICLEscore minimizationFREALIGN
EMDB-32993.3FSC 0.143, semi-independentEACH PARTICLEscore minimizationFREALIGN
EMDB-51603.3FSC 0.143EACH PARTICLEFourier Space ReconstructionFrealign, IMIRS
EMDB-51853.3FSC 0.5EMANIHRSRIHRSR, EMAN
EMDB-56233.3FSC 0.143 , and Gold Standard FSC, gold-standardEACH PARTICLEFREALIGN
EMDB-64063.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64073.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64083.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64163.3FSC 0.143, gold-standardEACH PARTICLERELION

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