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Database-ID

Resolution

Resolution Method

CTF correction

3D reconstruction Algorithm

3D reconstruction Software

PDB-2b6o1.9
PDB-4a822.0
PDB-3j6k2.496
PDB-3m9i2.5
PDB-2zz92.8
PDB-1tvk2.89
PDB-3j4g2.901
PDB-1at93.0
PDB-1sor3.0
PDB-2at93.0
EMDB-52563.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3izx3.1FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-25663.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-26603.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-26993.2OTHERCtffind for EACH FILM/CCDinitial angles were known from particle picking2dx_automator, Ctffind, Helixboxer, IHRSR/Spider
PDB-1fbb3.2
PDB-1fbk3.2
PDB-1vw33.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-1vw43.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-1vx63.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-1vx73.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-2d573.2
PDB-2h8a3.2CrystallographicCRYSTALLOGRAPHY
PDB-3j6b3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j793.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j7a3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
EMDB-59953.2FSC 0.143, gold-standardEACH PARTICLEphase residual minimizationFREALIGN, EMAN
PDB-3j7h3.2FSC 0.143EACH FILM/CCDs of each movie were aligned by cross-correlation using the cumulative average of previously aligned frames as a reference to align the remaining frames. Parameters of the contrast transfer function for EACH FILM/CCD were estimated from power spectra obtained using periodogram averaging with tiles of size 512x512 pixels extracted from all frames of each movie. These power spectra were then radially averaged and used to estimate the defocus for each image using frequencies in the 15.0-3.0 Angstrom range. CTF correction was done for EACH PARTICLE as implemented in FREALIGN's reconstruction protocolphase residual minimizationFREALIGN, EMAN
EMDB-57783.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
PDB-3j5p3.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
EMDB-51603.3FSC 0.143EACH PARTICLEFourier Space ReconstructionFrealign, IMIRS
EMDB-51853.3FSC 0.5EMANIHRSRIHRSR, EMAN
EMDB-56233.3FSC 0.143 , and Gold Standard FSC, gold-standardEACH PARTICLEFREALIGN
PDB-3iyl3.3FSC 0.143EACH PARTICLEFourier Space ReconstructionFrealign, IMIRS
PDB-3j063.3TruncationIHRSRIHRSR, EMAN
EMDB-26493.35FSC 0.143, gold-standardEACH PARTICLERelion
EMDB-25133.36FSC 0.143, gold-standardeach imageprojection matchingRELION
PDB-4ci03.36EACH IMAGEMAXIMUM LIKELIHOOD
EMDB-26613.4FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-57663.4feature-based method and R-factor in model refinementEACH PARTICLEprojection matchingeLite3D, Frealign
EMDB-27623.4FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-26503.4FSC 0.143, gold-standardEACH PARTICLERelion
PDB-3j7o3.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-3j7q3.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w1z3.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w203.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w243.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w253.4FSC 0.143EACH PARTICLEsingle particleRELION
EMDB-17523.5Comparison with X-ray mapPHASE FLIP > EACH PARTICLERIco, FPMRIco
EMDB-22783.5FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-54953.5FSC 0.143EACH PARTICLEprojection matchingEMAN, Frealign
EMDB-57643.5FSC 0.143 , feature-based method and R-factor in model refinementEACH PARTICLEprojection matchingeLite3D, Frealign
EMDB-57653.5FSC 0.143 , feature-based method and R-factor in model refinementEACH PARTICLEprojection matchingeLite3D, Frealign
PDB-1brd3.5
PDB-1jff3.5
PDB-2brd3.5
PDB-3dww3.5
PDB-3j263.5FSC 0.143EACH PARTICLEprojection matchingEMAN, Frealign
PDB-3j2v3.5
PDB-3j4u3.5FSC 0.143 , feature-based method and R-factor in model refinementEACH PARTICLEprojection matchingeLite3D, Frealign
EMDB-26463.5FSC 0.143, gold-standardEACH PARTICLERelion
PDB-3j7p3.5FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w213.5FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w223.5FSC 0.143EACH PARTICLEsingle particleRELION
PDB-4w233.5FSC 0.143EACH PARTICLEsingle particleRELION
PDB-1h6i3.54
EMDB-26033.6FSC 0.143, gold-standardEACH PARTICLERelionRelion
EMDB-51563.6FSC 0.143ctfilt3 with EACH PARTICLE adjustmentcentral sectionsfrealign
EMDB-51723.6FSC 0.5EACH PARTICLEcommon lineIMIRS
EMDB-54993.6FSC 0.143EMAN per particle, with astigmatism compensationMPSAEMAN
EMDB-55203.6FSC 0.143EMAN per particle, with astigmatism compensationMPSAEMAN
PDB-3iyn3.6FSC 0.5EACH PARTICLEcommon lineIMIRS
PDB-3izo3.6common line for orientation, center refinement icosahedral symmetry-adapted functions for 3D reconstructionIMIRS
PDB-3j273.6FSC 0.143EMAN, per particle, with astigmatism compensationMPSAEMAN
PDB-3j2p3.6FSC 0.143EMAN, per particle, with astigmatism compensationMPSAEMAN
EMDB-27763.6FSC 0.143, gold-standardEACH PARTICLERelion
EMDB-59223.64FSC 0.5, gold-standardHelicon
EMDB-59253.64FSC 0.5, gold-standardHelicon
PDB-3j6j3.64FSC 0.5Helicon
EMDB-25993.7FSC 0.143, gold-standardEACH PARTICLERelionRelion
PDB-1ih53.7
PDB-1tub3.7
PDB-4cuv3.7EACH PARTICLERELION
PDB-4cuw3.7EACH PARTICLERELION
PDB-4cux3.7EACH PARTICLERELION
PDB-4cuy3.7EACH PARTICLERELION
PDB-4v913.7EACH PARTICLERELION
PDB-4v923.7EACH PARTICLERELION
EMDB-14613.8Comparison with X-ray mapEACH PARTICLEFREALIGN randomized searchFREALIGN
EMDB-18243.8FSC 0.5EACH PARTICLEFourierEMAN
EMDB-26043.8FSC 0.143, gold-standardEACH PARTICLERelionRelion
EMDB-27043.8FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-51993.8FSC 0.143EACH PARTICLEprojection matchingfrealign
EMDB-54963.8FSC 0.143EACH PARTICLEprojection matchingEMAN, Frealign
EMDB-57763.8Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
EMDB-58303.8comparison with model, FSCeach imageIHRSRSpider, IHRSR
PDB-1fqy3.8
PDB-2xyy3.8EACH PARTICLEFOURIER
PDB-3gzt3.8EACH PARTICLEprojection matching, refinement using FREALIGN
PDB-3gzu3.8EACH PARTICLE CTFprojection matching, refinement using FEALIGN

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