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Database-ID

Resolution

Resolution Method

CTF correction

3D reconstruction Algorithm

3D reconstruction Software

EMDB-30011.4DIFFRACTION PATTERN/LAYERLINES
EMDB-30281.4DIFFRACTION PATTERN/LAYERLINES
PDB-4ril1.43
EMDB-29731.9DIFFRACTION PATTERN/LAYERLINES
PDB-2b6o1.9
PDB-4a822.0
PDB-4d3e2.12MIX OF single particle, helical RECONSTRUCTION
PDB-5a1a2.2EACH PARTICLE
EMDB-29842.2FSC 0.143, semi-independentEACH PARTICLEphase residual minimizationFREALIGN
PDB-3j6k2.496
EMDB-63132.5DIFFRACTION PATTERN/LAYERLINES
EMDB-63422.5DIFFRACTION PATTERN/LAYERLINES
PDB-3m9i2.5
PDB-5a3e2.501
EMDB-62722.6FSC 0.143, semi-independentEACH PARTICLEprojection matchingTIGRIS, IMAGIC, FREALIGN
PDB-3j9s2.6FSC 0.143EACH PARTICLEprojection matchingTIGRIS, IMAGIC, FREALIGN
PDB-2zz92.8
EMDB-62872.8FSC 0.143, gold-standardEACH PARTICLEsingle particleRelion
PDB-1tvk2.89
EMDB-28472.9FSC 0.143, gold-standardlocal CTF correctionHOME MADE-made, IMAGIC, Relion
EMDB-29452.9DIFFRACTION PATTERN/LAYERLINES
PDB-5afi2.9LOCAL CTF CORRECTION
EMDB-62242.9FSC 0.143, gold-standardEACH PARTICLEMaximum a posteriori optimizationRELION
PDB-3j9c2.9FSC 0.143EACH PARTICLEMaximum a posteriori optimizationRELION
PDB-3jb02.9FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-63742.9FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
PDB-3j4g2.901
PDB-1at93.0
PDB-1sor3.0
PDB-2at93.0
PDB-3jay3.0FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-63783.0FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-30143.04FSC 0.143, gold-standardCTFFIND3 per micrographRELION
EMDB-52563.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3izx3.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jaz3.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb13.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb23.1FSC 0.143EACH PARTICLEcommon lineIMIRS
PDB-3jb33.1FSC 0.143EACH PARTICLEcommon lineIMIRS
EMDB-63713.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63753.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63763.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-63773.1FSC 0.143, semi-independentEACH PARTICLEcommon lineIMIRS
EMDB-25663.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-59953.2FSC 0.143, gold-standardEACH PARTICLEphase residual minimizationFREALIGN, EMAN
EMDB-63143.2DIFFRACTION PATTERN/LAYERLINES
PDB-1fbb3.2
PDB-1fbk3.2
PDB-2d573.2
PDB-2h8a3.2CrystallographicCRYSTALLOGRAPHY
PDB-3j6b3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j7b3.2
PDB-3j7h3.2FSC 0.143EACH FILM/CCDs of each movie were aligned by cross-correlation using the cumulative average of previously aligned frames as a reference to align the remaining frames. Parameters of the contrast transfer function for EACH FILM/CCD were estimated from power spectra obtained using periodogram averaging with tiles of size 512x512 pixels extracted from all frames of each movie. These power spectra were then radially averaged and used to estimate the defocus for each image using frequencies in the 15.0-3.0 Angstrom range. CTF correction was done for EACH PARTICLE as implemented in FREALIGN's reconstruction protocolphase residual minimizationFREALIGN, EMAN
PDB-3j7u3.2home-made program
EMDB-26603.2FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j793.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-3j7a3.2FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
EMDB-28793.27FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-57783.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
PDB-3j5p3.275Gold standard FSC 0.143EACH PARTICLEMaximum likelihoodRELION
EMDB-51603.3FSC 0.143EACH PARTICLEFourier Space ReconstructionFrealign, IMIRS
EMDB-51853.3FSC 0.5EMANIHRSRIHRSR, EMAN
EMDB-62393.3FSC 0.143, semi-independentEACH PARTICLEreference matchFrealign
EMDB-62403.3FSC 0.143, semi-independentEACH PARTICLEreference matchFrealign
PDB-3iyl3.3FSC 0.143EACH PARTICLEFourier Space ReconstructionFrealign, IMIRS
PDB-3j063.3TruncationIHRSRIHRSR, EMAN
PDB-3j9i3.3FSC 0.143EACH PARTICLEFREALIGNGPU-enhanced FREALIGN
EMDB-64013.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64063.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64073.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-64083.3FSC 0.143, semi-independentEACH PARTICLEFrealign
EMDB-56233.3FSC 0.143 , and Gold Standard FSC, gold-standardEACH PARTICLEFREALIGN
EMDB-63493.3FSC 0.143, semi-independentCTFFIND4, EACH PARTICLEprojection matchingEMAN, FREALIGN
PDB-3jak3.3FSC 0.143CTFFIND4, EACH PARTICLEprojection matchingEMAN, FREALIGN
EMDB-26493.35FSC 0.143, gold-standardEACH PARTICLERelion
EMDB-28423.35FSC 0.143, semi-independentCTFTILT (specific for each segment)projection matchingSPRING
PDB-4udv3.35CTFTILT (SPECIFIC FOR EACH SEGMENT)projection matching
EMDB-25133.36FSC 0.143, gold-standardeach imageprojection matchingRELION
PDB-4ci03.36EACH IMAGEMAXIMUM LIKELIHOOD
EMDB-26503.4FSC 0.143, gold-standardEACH PARTICLERelion
EMDB-27623.4FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-27873.4FSC 0.143, gold-standardEACH detector framemaximum likelyhoodCTFFIND, RELION
PDB-3j7o3.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-3j7q3.4FSC 0.143EACH PARTICLEsingle particleRELION
PDB-3j7t3.4
PDB-3j7y3.4FSC 0.143 gold-standardEACH PARTICLECTFFIND, RELION
PDB-4v193.4EACH DETECTOR FRAMEMAXIMUM LIKELIHOOD BASED REFINEMENT IMPLEMENTED IN RELION
PDB-4v1a3.4EACH DETECTOR FRAMEMAXIMUM LIKELIHOOD BASED REFINEMENT IMPLEMENTED IN RELION
EMDB-57663.4feature-based method and R-factor in model refinementEACH PARTICLEprojection matchingeLite3D, Frealign
EMDB-26613.4FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
PDB-5a633.4EACH PARTICLE
EMDB-30613.4FSC 0.143, gold-standardEACH PARTICLECTFFIND, RELION
EMDB-63473.4FSC 0.143, semi-independentCTFFIND4, EACH PARTICLEprojection matchingEMAN, FREALIGN
EMDB-63513.4FSC 0.143, semi-independentCTFFIND4, EACH PARTICLEprojection matchingEMAN, FREALIGN
PDB-3jar3.4FSC 0.143CTFFIND4, EACH PARTICLEprojection matchingEMAN, FREALIGN
EMDB-30133.44FSC 0.143, gold-standardCTFFIND3 per micrographRELION
PDB-3jah3.45FSC 0.143CTFFIND, RELION
EMDB-30393.45FSC 0.143, gold-standardCTFFIND, RELION
EMDB-30473.46FSC 0.143, gold-standardEACH PARTICLERelion
PDB-3jam3.46FSC 0.143RELION

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