[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 59,816 items (all data)


DB-ID

Title

Method

Authors
EMDB-0001Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme transcription open complexsingle particle reconstructionGlyde R, Ye FZ
EMDB-0002Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme intermediate partially loaded complexsingle particle reconstructionGlyde R, Ye FZ
EMDB-0004Saccharomyces cerevisiae respiratory supercomplex III2IVsingle particle reconstructionRathore S, Berndtsson J, Conrad J, Ott M
EMDB-0005Saccharomyces cerevisiae supercomplex class 1 (III2IV)single particle reconstructionRathore S, Berndtsson J, Conrad J, Ott M
EMDB-0006Saccharomyces cerevisiae supercomplex class2 (III2IV2)single particle reconstructionRathore S, Berndtsson J, Conrad J, Ott M
EMDB-0007MlaBDEF complex from A. baumanniisingle particle reconstructionBergeron JRC, Kollman JM
EMDB-0008The baseplate complex from the type VI secretion systemsingle particle reconstructionRapisarda C, Fronzes R
EMDB-0009The baseplate complex from the type VI secretion systemsingle particle reconstructionRapisarda C, Fronzes R
EMDB-0010The baseplate complex from the type VI secretion systemsingle particle reconstructionRapisarda C, Fronzes R
EMDB-0011Structure of Mycobacterium tuberculosis Fatty Acid Synthase - Isingle particle reconstructionElad N, Baron S
EMDB-0012CryoEM structure of the MDA5-dsRNA filament in complex with AMPPNPhelical reconstructionYu Q, Qu K
EMDB-0013Helical reconstruction of BCL10 CARD and MALT1 DEATH DOMAIN complexhelical reconstructionSchlauderer F, Desfosses A, Gutsche I, Hopfner KP, Lammens K
EMDB-0014Two protofilament beta-2-microglobulin amyloid fibrilhelical reconstructionIadanza MG, Ranson NA
EMDB-0015Symmetry-free cryo-EM map of GroEL-actinsingle particle reconstructionMilicic G, Balchin D, Hayer-Hartl M, Hartl FU
EMDB-0016Symmetry-free cryo-EM map of TRiC in apo state (nucleotide free)single particle reconstructionMilicic G, Balchin D, Hayer-Hartl M, Hartl FU
EMDB-0017Symmetry-free cryo-EM map of TRiC-actinsingle particle reconstructionMilicic G, Balchin D, Hayer-Hartl M, Hartl FU
EMDB-0018Symmetry-free cryo-EM map of TRiC-actin-alpha_CCT1single particle reconstructionMilicic G, Balchin D, Hayer-Hartl M, Hartl FU
EMDB-0019Four protofilament beta-2-microglobulin amyloid fibrilhelical reconstructionIadanza MG, Ranson NA
EMDB-0020Hexameric cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens (TvNiR)single particle reconstructionBaymukhametov TN, Chesnokov YM, Pichkur EB, Boyko KM, Tikhonova TV, Myasnikov AG, Vasiliev AL, Lipkin AV, Popov VO, Kovalchuk MV
EMDB-0021Single protofilament beta-2-microglobulin amyloid fibrilhelical reconstructionIadanza MG, Ranson NA
EMDB-0022Symmetry-free cryo-EM map of TRiC-ADP-BeFxsingle particle reconstructionStrauss M, Milicic G, Balchin D, Hayer-Hartl M, Hartl FU
EMDB-0023CryoEM structure of the MDA5-dsRNA filament in complex with ADP-AlF4helical reconstructionYu Q, Qu K, Modis Y
EMDB-0024CryoEM structure of the MDA5-dsRNA filament in complex with ATP (10 mM)helical reconstructionYu Q, Qu K
EMDB-0025Influenza hemagglutinin (HA) trimer reconstruction at 3.2 Angstrom resolution using data from EMPIAR-10097 processed with Warp and cryoSPARCsingle particle reconstructionTegunov D, Cramer P
EMDB-0026Neurturin-GFRa2-RET extracellular complexsingle particle reconstructionBigalke JM, Aibara S, Sandmark J, Amunts A
EMDB-0027Sequence-programmable covalent bonding of designed DNA assemblies, brick-like_object_with_TT-motifs_(1)-(3)_crosslinkedsingle particle reconstructionDietz H, Kube M
EMDB-0028Sequence-programmable covalent bonding of designed DNA assemblies, brick-like_object_with_TT-motifs_(1)-(3)_crosslinked_PBSsingle particle reconstructionDietz H, Kube M
EMDB-0029Sequence-programmable covalent bonding of designed DNA assemblies, brick-like_object_with_TT-motifs_(1)-(4)_crosslinkedsingle particle reconstructionDietz H, Kube M
EMDB-0030Structure of activated transcription complex Pol II-DSIF-PAF-SPT6 (Map B, NGN/SPT4 selected particles)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0031Structure of activated transcription complex Pol II-DSIF-PAF-SPT6 (Map A)single particle reconstructionVos SM, Farnung L, Boehing M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0032Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, KOW1 selected particles (Map C)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0033Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, KOWx-4 selected particles (Map D)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0034Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, SPT6 core selected particles (Map E)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0035Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, selected SPT6 tSH2 particles (Map F)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0036Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, upstream DNA selected particles (Map G)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0037Structure of activated transcription complex Pol II-DSIF-PAF-SPT6, CTR9 selected particles (Map H)single particle reconstructionVos SM, Farnung L, Boehning M, Linden A, Wigge C, Urlaub H, Cramer P
EMDB-0038Structure of paused transcription complex Pol II-DSIF-NELFsingle particle reconstructionVos SM, Farnung L
EMDB-0039Structure of paused transcription complex Pol II-DSIF-NELFsingle particle reconstructionVos SM, Farnung L, Urlaub H, Cramer P
EMDB-0040Structure of paused transcription complex Pol II-DSIF-NELF (Map 3)single particle reconstructionVos SM, Farnung L, Urlaub H, Cramer P
EMDB-0041Structure of paused transcription complex Pol II-DSIF-NELF, (Map 4)single particle reconstructionVos SM, Farnung L, Urlaub H, Cramer P
EMDB-0042Structure of paused transcription complex Pol II-DSIF-NELF, (Map 5)single particle reconstructionVos SM, Farnung L, Urlaub H, Cramer P
EMDB-0043cryoEM structure of the lambdaN Transcription Antitermination Complex at 3.7 A resolution.single particle reconstructionKrupp F, Spahn C
EMDB-0044Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24.subtomogram averagingHutchings J, Zanetti G
EMDB-0045Negative stain EM map of the inner membrane protein GspF (XcpS) of the bacterial type II secretion systemsingle particle reconstructionVan Putte W, Savvides S
EMDB-0046Single Particle Cryo-EM map of human Transferrin receptor 1 - H-Ferritin complex at 5.5 Angstrom resolution.single particle reconstructionTesti C, Montemiglio LC, Vallone B, Des Georges A, Boffi A, Mancia F, Baiocco P
EMDB-0047Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)single particle reconstructionPellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
EMDB-0048Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)single particle reconstructionPellegrino S, Yusupov M, Yusupova G, Hashem Y
EMDB-0049Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)single particle reconstructionPellegrino S, Yusupov M, Yusupova G, Hashem Y
EMDB-0050DNA-devoid HCIV-1 virus particlesingle particle reconstructionSantos-Perez I, Charro D, Gil-Carton D, Azkargorta M, Elortza F, Bamford DH, Oksanen HM, Abrescia NGA
EMDB-0051Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10single particle reconstructionZhang WJ, Lukoynova N, Vaughan CK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more