[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,345 items for (keywords: recombinant & proteins)

PDB-8w12:
Cryo-EM structure of VP3-VP6 heterohexamer

PDB-8w19:
Cryo-EM structure of BTV star-subcore

PDB-9auc:
Human Amylin1 Receptor in Complex with Gs and human Calcitonin Gene-Related Peptide

PDB-8u4z:
Klebsiella pneumoniae encapsulin-associated DyP peroxidase

PDB-8u50:
Klebsiella pneumoniae DyP peroxidase-loaded encapsulin shell

PDB-8u51:
Klebsiella pneumoniae SUMO-loaded encapsulin shell

PDB-9bei:
Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody

PDB-8ptm:
Structure of the transcription termination factor Rho in complex with Rof and ADP

PDB-8ptn:
Structure of the transcription termination factor Rho in complex with Rof

PDB-8pto:
Structure of Rho pentamer in complex with Rof and ADP

PDB-8ptp:
Structure of Rho pentamer in complex with Rof

PDB-8i47:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 5.5

PDB-8i48:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in closed state

PDB-8jj3:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 2.5

PDB-8wcq:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in intermediate state

PDB-8wcr:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in open state

PDB-8tc3:
CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii

PDB-8jp4:
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)

PDB-8jp5:
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)

PDB-8jp6:
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)

PDB-8jp7:
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate B)

PDB-8jp8:
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate C)

PDB-8jp9:
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate D)

PDB-8jpg:
Cryo-EM structure of full-length ERGIC-53 with MCFD2

PDB-8izl:
Structure of the Mumps Virus L Protein Bound by Phosphoprotein Tetramer

PDB-8izm:
Structure of the Mumps Virus L Protein (state2) Bound by Phosphoprotein Tetramer

EMDB-19497:
Cryo-EM reconstruction of the formin Cdc12 bound to the barbed end of F-actin (without phalloidin)

EMDB-19503:
Structure of the F-actin barbed end bound by formin mDia1

PDB-8ru2:
Structure of the F-actin barbed end bound by formin mDia1

PDB-8i41:
Cryo-EM structure of nanodisc (asolectin) reconstituted GLIC at pH 7.5

PDB-8i42:
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 7.5

PDB-8wy8:
Cryo-EM structure of DSR2 apo complex

PDB-8wy9:
Cryo-EM structure of DSR2 apo (partial) complex

PDB-8wya:
Cryo-EM structure of DSR2-tube complex

PDB-8wyb:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ complex

PDB-8wyc:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ (partial) complex

PDB-8wyd:
Cryo-EM structure of DSR2-DSAD1 complex

PDB-8wye:
Cryo-EM structure of DSR2-DSAD1 (partial) complex

PDB-8wyf:
Cryo-EM structure of DSR2-DSAD1-NAD+ (partial) complex

PDB-8sl3:
Human adenylyl Cyclase 5 in complex with Gbg

PDB-8tl6:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF5

PDB-8qgy:
Cryo-EM structure of C-terminally truncated Apoptosis signal-regulating kinase 1 (ASK1)

PDB-8rox:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 12

PDB-8roy:
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 24

PDB-8r5x:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - F particle

PDB-8r5y:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - A particle

PDB-8r5z:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - E particle

PDB-8twv:
ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

PDB-8twz:
ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

PDB-8glt:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more