[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 44 items for (author: konevega & al)

EMDB-15995:
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=4 topology
Method: single particle / : Egorov VV, Shvetsov AV, Pichkur EB, Shaldzhyan AA, Zabrodskaya YA, Vinogradova DS, Nekrasov PA, Gorshkov AN, Garmay YP, Kovaleva AA, Stepanova LA, Tsybalova LM, Shtam TA, Myasnikov AG, Konevega AL

EMDB-16009:
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=3 topology
Method: single particle / : Egorov VV, Shvetsov AV, Pichkur EB, Shaldzhyan AA, Zabrodskaya YA, Vinogradova DS, Nekrasov PA, Gorshkov AN, Garmay YP, Kovaleva AA, Stepanova LA, Tsybalova LM, Shtam TA, Myasnikov AG, Konevega AL

PDB-8bdz:
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=4 topology
Method: single particle / : Egorov VV, Shvetsov AV, Pichkur EB, Shaldzhyan AA, Zabrodskaya YA, Vinogradova DS, Nekrasov PA, Gorshkov AN, Garmay YP, Kovaleva AA, Stepanova LA, Tsybalova LM, Shtam TA, Myasnikov AG, Konevega AL

PDB-8ber:
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=3 topology
Method: single particle / : Egorov VV, Shvetsov AV, Pichkur EB, Shaldzhyan AA, Zabrodskaya YA, Vinogradova DS, Nekrasov PA, Gorshkov AN, Garmay YP, Kovaleva AA, Stepanova LA, Tsybalova LM, Shtam TA, Myasnikov AG, Konevega AL

EMDB-28197:
Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
Method: single particle / : Rybak MY, Gagnon MG

PDB-8ekc:
Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
Method: single particle / : Rybak MY, Gagnon MG

EMDB-13017:
RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-10656:
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

EMDB-10657:
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

PDB-6xza:
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

PDB-6xzb:
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

EMDB-10655:
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

PDB-6xz7:
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Method: single particle / : Pichkur EB, Polikanov YS, Myasnikov AG, Konevega AL

EMDB-4121:
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-4122:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-4123:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-4124:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-4125:
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-4126:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lza:
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lzb:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lzc:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lzd:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lze:
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

PDB-5lzf:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
Method: single particle / : Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroeder GF, Grubmueller H, Ficner R, Rodnina MV, Stark H

EMDB-2847:
2.9A structure of E. coli ribosome-EF-Tu complex by Cs-corrected cryo-EM
Method: single particle / : Fischer N, Neumann P, Konevega AL, Bock LV, Ficner R, Rodnina MV, Stark H

PDB-5afi:
2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
Method: single particle / : Fischer N, Neumann P, Konevega AL, Bock LV, Ficner R, Rodnina MV, Stark H

EMDB-1716:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1717:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1718:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1719:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1720:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1721:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1722:
Ribosome dynamics and tRNA movement as visualized by time-resolved electon cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1723:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1724:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1725:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1726:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1727:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
Method: single particle / : Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H

EMDB-1551:
Pretranslocation ribosome. Total population.
Method: single particle / : Julian P, Konevega AL, Scheres SHW, Lazaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M

EMDB-1553:
Pretranslocation ribosome. Group after ML3D classification. Racheted ribosome with tRNAs in hybrid positions.
Method: single particle / : Julian P, Konevega AL, Scheres SHW, Lazaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M

EMDB-1554:
Pretranslocation ribosome. Group after ML3D classification. Non-racheted and classical tRNA positions.
Method: single particle / : Julian P, Konevega AL, Scheres SHW, Lazaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M

EMDB-1323:
Spontaneous reverse movement of mRNA-bound tRNA through the ribosome.
Method: single particle / : Konevega AL, Fischer N, Semenkov YP, Stark H, Wintermeyer W, Rodnina MV

EMDB-1324:
Spontaneous reverse movement of mRNA-bound tRNA through the ribosome.
Method: single particle / : Konevega AL, Fischer N, Semenkov YP, Stark H, Wintermeyer W, Rodnina MV

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more