[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 465 items for (author: de & marco & a)

EMDB-17329:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-17330:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p03:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p09:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-42371:
Mouse apoferritin imaged with a square aperture
Method: single particle / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-42372:
Mouse apoferritin imaged with a round aperture
Method: single particle / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-42373:
Mouse apoferritin imaged with a square aperture with P2 projection lens rotation, reconstructed from 25,000 particles
Method: single particle / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-42374:
Mouse apoferritin imaged with a round aperture without P2 projection lens rotation, reconstructed from 25,000 particles
Method: single particle / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-17757:
Cryo-EM structure of the Cas12m-crRNA-target DNA complex
Method: single particle / : Sasnauskas G, Tamulaitiene G, Karvelis T, Bigelyte G, Siksnys V

PDB-8pm4:
Cryo-EM structure of the Cas12m-crRNA-target DNA complex
Method: single particle / : Sasnauskas G, Tamulaitiene G, Karvelis T, Bigelyte G, Siksnys V

EMDB-42851:
5x5 tiled montage tomogram of a holey carbon grid with apoferritin imaged with a square electron beam
Method: electron tomography / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-42879:
3x3 tiled montage tomogram of a yeast lamella imaged with a square electron beam
Method: electron tomography / : Chua EYD, Alink LM, Kopylov M, Johnston J, Einsenstein F, de Marco A

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-17576:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-17578:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p99:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p9y:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-15089:
Sodium pumping NADH-quinone oxidoreductase with substrates NADH and Q2
Method: single particle / : Hau JL, Kaltwasser S, Vonck J, Fritz G, Steuber J

PDB-8a1u:
Sodium pumping NADH-quinone oxidoreductase with substrates NADH and Q2
Method: single particle / : Hau JL, Kaltwasser S, Vonck J, Fritz G, Steuber J

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

PDB-8svf:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-15475:
Structure of the Ancestral Scaffold Antigen-5 of Coronavirus Spike protein
Method: single particle / : Hueting D, Schriever K, Wallden K, Andrell J, Syren PO

EMDB-15482:
Structure of the Ancestral Scaffold Antigen-6 of Coronavirus Spike protein
Method: single particle / : Hueting D, Schriever K, Wallden K, Andrell J, Syren PO

PDB-8aja:
Structure of the Ancestral Scaffold Antigen-5 of Coronavirus Spike protein
Method: single particle / : Hueting D, Schriever K, Wallden K, Andrell J, Syren PO

PDB-8ajl:
Structure of the Ancestral Scaffold Antigen-6 of Coronavirus Spike protein
Method: single particle / : Hueting D, Schriever K, Wallden K, Andrell J, Syren PO

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-41298:
CryoEM structure of Myxococcus xanthus type IV pilus
Method: helical / : Zheng W, Egelman EH

PDB-8tj2:
CryoEM structure of Myxococcus xanthus type IV pilus
Method: helical / : Zheng W, Egelman EH

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

PDB-8dtk:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-16452:
Human spliceosomal PM5 C* complex
Method: single particle / : Dybkov O, Kastner B, Luehrmann R

EMDB-28531:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 in the 3-RBD Down conformation
Method: single particle / : Williams JA, Harshbarger W

EMDB-28532:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs in the open conformation
Method: single particle / : Williams JA, Harshbarger W

EMDB-28533:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs exposed
Method: single particle / : Williams JA, Harshbarger W

PDB-8epn:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 in the 3-RBD Down conformation
Method: single particle / : Williams JA, Harshbarger W

PDB-8epp:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs in the open conformation
Method: single particle / : Williams JA, Harshbarger W

PDB-8epq:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs exposed
Method: single particle / : Williams JA, Harshbarger W

EMDB-15088:
Sodium pumping NADH-quinone oxidoreductase
Method: single particle / : Hau JL, Kaltwasser S, Vonck J, Fritz G, Steuber J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more