[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 235 items for (author: yap & m)

EMDB-37320:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Shi T, Yang H, Wang Z, Yan R

EMDB-37321:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37322:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37323:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37329:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37330:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37332:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

PDB-8w6c:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R

PDB-8w6d:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6g:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6h:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6n:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6o:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6t:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

EMDB-29907:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v); consensus map with only Fab 1G01 resolved
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-29908:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), locally refined map
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-29909:
Structure of human NDS.3 Fab in complex with influenza virus neuraminidase from A/Darwin/09/2021 (H3N2)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gat:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gau:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gav:
Structure of human NDS.3 Fab in complex with influenza virus neuraminidase from A/Darwin/09/2021 (H3N2)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-41048:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

PDB-8t5c:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

EMDB-35254:
ACE2-SIT1 complex bound with proline
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35255:
ACE2-B0AT1 complex bound with glutamine
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35256:
ACE2-B0AT1 complex bound with methionine
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35260:
Cryo-EM map of the ACE2-SIT1 complex bound with proline, focused refined on extracellular region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35261:
cryo-EM map of the ACE2-SIT1 complex bound with proline, focused refined on transmembrane region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35262:
cryo-EM map of the ACE2-B0AT1 complex bound with glutamine, focused refined on extracellular region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35265:
cryo-EM map of the ACE2-B0AT1 complex bound with glutamine, focused refined on transmembrane region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35271:
cryo-EM map of the ACE2-B0AT1 complex bound with methionine, focused refined on extracellular region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-35273:
cryo-EM map of the ACE2-B0AT1 complex bound with methionine, focused refined on transmembrane region
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

PDB-8i91:
ACE2-SIT1 complex bound with proline
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

PDB-8i92:
ACE2-B0AT1 complex bound with glutamine
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

PDB-8i93:
ACE2-B0AT1 complex bound with methionine
Method: single particle / : Li YN, Zhang YY, Shen YP, Yan RH

EMDB-41302:
Lassa GPC trimer in complex with Fab GP23
Method: single particle / : Gorman J, Kwong PD

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-26859:
Ligand-free Lassa GPC Trimer with C3 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-26740:
Ligand-free Lassa GPC Trimer with C1 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-34648:
CryoEM structure of Helicobacter pylori UreFD/urease complex
Method: single particle / : Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Wong KB, Lea SM

EMDB-34659:
CryoEM Structure of Klebsiella pneumoniae UreD/urease complex
Method: single particle / : Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Wong KB, Lea SM

PDB-8hc1:
CryoEM structure of Helicobacter pylori UreFD/urease complex
Method: single particle / : Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Wong KB, Lea SM

PDB-8hcn:
CryoEM Structure of Klebsiella pneumoniae UreD/urease complex
Method: single particle / : Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Wong KB, Lea SM

EMDB-28915:
SIRT6 bound to an H3K9Ac nucleosome
Method: single particle / : Markert J, Whedon S, Wang Z, Cole P, Farnung L

PDB-8f86:
SIRT6 bound to an H3K9Ac nucleosome
Method: single particle / : Markert J, Whedon S, Wang Z, Cole P, Farnung L

EMDB-34649:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 1 YB9-258 Fab (1 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34650:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 2 YB9-258 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34651:
SARS-CoV-2 wildtype spike trimer (6P) in complex with 3 YB9-258 Fabs and 3 R1-32 Fabs (3 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more