[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 103 items for (author: yanagisawa & ha)

EMDB-33293:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

EMDB-33294:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

PDB-7xmc:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

PDB-7xmd:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

EMDB-33833:
In situ subtomogram average of f-actin
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-33834:
Subtomogram average of 70S ribosome (11x11)
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-32906:
Structure of human langerin complex in Birbeck granules
Method: subtomogram averaging / : Oda T, Yanagisawa H

PDB-7wz8:
Structure of human langerin complex in Birbeck granules
Method: subtomogram averaging / : Oda T, Yanagisawa H

EMDB-33115:
Subtomogram average of 70S ribosome
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-33116:
Subtomogram average of 70S ribosome (50S aligned)
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-33117:
Subtomogram average of 70S ribosome (30S aligned)
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-33118:
In situ subtomogram average of 80S ribosome
Method: subtomogram averaging / : Eisenstein F, Danev R

EMDB-31091:
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4
Method: single particle / : Danev R, Yanagisawa H, Kikkawa M

EMDB-30684:
Krios G4 apoferritin test with Falcon 4 (not filter) EPU 1x1x4
Method: single particle / : Danev R

EMDB-30683:
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x1
Method: single particle / : Danev R

EMDB-30685:
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 1x1x4
Method: single particle / : Danev R

EMDB-30686:
Krios G4 apoferritin test with K3/(slit out) SerialEM BIS 1x1x4
Method: single particle / : Danev R

EMDB-30242:
Cardiac Z-disc in EGTA+ATP state, F-actin part (see the additional maps for the composite map and other components)
Method: subtomogram averaging / : Oda T, Yanagisawa H

EMDB-30243:
Cardiac Z-disc in Ca+ATP state, F-actin part (see the additional maps for the composite map and other components)
Method: subtomogram averaging / : Oda T, Yanagisawa H

EMDB-0711:
F-actin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

EMDB-0712:
F-actin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

EMDB-0714:
Tropomyosin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0715:
Tropomyosin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0717:
Troponin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0718:
Troponin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0796:
F-actin part of cardiac thin filament, actin levels II-IV, low calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0797:
Tropomyosin in low calcium state, actin levels II-IV
Method: single particle / : Oda T, Yanagisawa H

EMDB-0798:
F-actin part of cardiac thin filament in low calcium state, actin levels VI-VII, I
Method: single particle / : Oda T, Yanagisawa H

EMDB-0799:
Tropomyosin of cardiac thin filament in low Ca state, actin levels VI-VII, I
Method: single particle / : Oda T, Yanagisawa H

EMDB-0802:
F-actin part of cardiac thin filament in high Ca state, actin levels II-IV
Method: single particle / : Oda T, Yanagisawa H

EMDB-0804:
Tropomyosin in high Ca state, actin levels II-IV
Method: single particle / : Oda T, Yanagisawa H

EMDB-0805:
F-actin part of cardiac thin filament in high Ca state, actin levels VI-VII, I
Method: single particle / : Oda T, Yanagisawa H

EMDB-0806:
Tropomyosin in high Ca state, actin levels VI-VII, I
Method: single particle / : Oda T, Yanagisawa H

EMDB-0807:
Cardiac thin filament in low calcium state
Method: single particle / : Oda T, Yanagisawa H

EMDB-0808:
Cardiac thin filament in high calcium state
Method: single particle / : Oda T, Yanagisawa H

PDB-6kll:
F-actin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

PDB-6kln:
F-actin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

PDB-6klp:
Tropomyosin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

PDB-6klq:
Tropomyosin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

PDB-6klt:
Troponin of cardiac thin filament in low-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

PDB-6klu:
Troponin of cardiac thin filament in high-calcium state
Method: single particle / : Oda T, Yanagisawa H, Wakabayashi T

EMDB-9914:
Cryo-EM structure of mouse heavy-chain apoferritin at 2.01 A
Method: single particle / : Yanagisawa H, Danev R, Kikkawa M

EMDB-9766:
Doublet microtubule of fap45 null mutant
Method: subtomogram averaging / : Owa M, Uchihashi T, Yanagisawa H, Yamano T, Iguchi H, Fukuzawa H, Wakabayashi K, Ando T, Kikkawa M

EMDB-9767:
Doublet microtubule of fap52 null mutant
Method: subtomogram averaging / : Owa M, Uchihashi T, Yanagisawa H, Yamano T, Iguchi H, Fukuzawa H, Wakabayashi K, Ando T, Kikkawa M

EMDB-9768:
Doublet microtubule of wild type
Method: subtomogram averaging / : Owa M, Uchihashi T, Yanagisawa H, Yamano T, Iguchi H, Fukuzawa H, Wakabayashi K, Ando T, Kikkawa M

EMDB-6952:
Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms
Method: single particle / : Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

PDB-5zsu:
Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms
Method: single particle / : Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

EMDB-9599:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.62 A
Method: single particle / : Danev R, Yanagisawa H, Kikkawa M

EMDB-6504:
Docking complex-independent alignment of outer dynein arms with 24-nm periodicity
Method: subtomogram averaging / : Oda T, Abe T, Yanagisawa H, Kikkawa M

EMDB-6505:
Docking complex-independent alignment of outer dynein arms with 24-nm periodicity
Method: subtomogram averaging / : Oda T, Abe T, Yanagisawa H, Kikkawa M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more