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Showing 1 - 50 of 61 items for (author: xiangan & liu)

EMDB-24768:
C1 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208)
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-24769:
C13 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208).
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-24770:
C17 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208)
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-24771:
C13 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-24772:
C17 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-24773:
C16 reconstruction for Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

PDB-7spb:
Models for C13 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208).
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

PDB-7spc:
Models for C17 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208).
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

PDB-7spi:
Models for C13 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

PDB-7spj:
Models for C17 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

PDB-7spk:
Models for C16 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by a plasmid overproducing TraV, TraK and TraB of pED208
Method: single particle / : Liu X, Khara P, Baker ML, Christie PJ, Hu B

EMDB-5984:
CryoEM of Bacteriophage PRD1 wild-type
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5985:
CryoEM of Bacteriophage PRD1 procapsid
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5986:
CryoEM of Bacteriophage PRD1 Sus621 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5987:
CryoEM of Bacteriophage PRD1 Sus526 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5988:
CryoEM of Bacteriophage PRD1 Sus42 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-6001:
Fako virus capsid: a newly-isolated reovirus has the simplest genomic and structural organization of any reovirus
Method: single particle / : Auguste AJ, Kaelber JT, Fokam EB, Guzman H, Carrington CVF, Erasmus JH, Kamgang B, Popov VL, Jakana J, Liu X, Wood TG, Widen SG, Vasilakis N, Tesh RB, Chiu W, Weaver SC

EMDB-6002:
Fako virus virion: a newly-isolated reovirus has the simplest genomic and structural organization of any reovirus
Method: single particle / : Auguste AJ, Kaelber JT, Fokam EB, Guzman H, Carrington CVF, Erasmus JH, Kamgang B, Popov VL, Jakana J, Liu X, Wood TG, Widen SG, Vasilakis N, Tesh RB, Chiu W, Weaver SC

EMDB-6000:
Full virus map of Brome Mosaic Virus
Method: single particle / : Wang Z, Hryc FC, Bammes B, Afonine PV, Jakana J, Chen DH, Liu XA, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7l:
Full virus map of brome mosaic virus
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7m:
Virus model of brome mosaic virus (first half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7n:
Virus model of brome mosaic virus (second half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

EMDB-5742:
Zernike Phase Contrast electron cryo-tomography of cyanophage Syn5 assembly intermediates
Method: subtomogram averaging / : Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W

EMDB-5743:
Zernike Phase Contrast electron cryo-tomography of cyanophage Syn5 assembly intermediates
Method: subtomogram averaging / : Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W

EMDB-5744:
Zernike Phase Contrast electron cryo-tomography of cyanophage Syn5 assembly intermediates
Method: subtomogram averaging / : Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W

EMDB-5745:
Zernike Phase Contrast electron cryo-tomography of cyanophage Syn5 assembly intermediates
Method: subtomogram averaging / : Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W

EMDB-5746:
Zernike Phase Contrast electron cryo-tomography of cyanophage Syn5 assembly intermediates
Method: subtomogram averaging / : Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W

PDB-2yew:
Modeling Barmah Forest virus structural proteins
Method: single particle / : Kostyuchenko VA, Jakana J, Liu X, Haddow AD, Aung M, Weaver SC, Chiu W, Lok SM

EMDB-1886:
The 6A cryo-EM reconstruction of Barmah Forest virus
Method: single particle / : Kostyuchenko VA, Jakana J, Liu X, Haddow AD, Aung M, Weaver SC, Chiu W, Lok SM

PDB-3j0c:
Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map
Method: single particle / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W

PDB-3j0g:
Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map
Method: single particle / : Zhang R, Hryc CF, Chiu W

EMDB-5275:
4.4 Angstrom Cryo-EM Structure of an Enveloped Alphavirus Venezuelan Equine Encephalitis Virus
Method: single particle / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W

EMDB-5276:
4.4 Angstrom Cryo-EM Structure of an Enveloped Alphavirus Venezuelan Equine Encephalitis Virus
Method: single particle / : Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W

EMDB-5203:
Subtomogram average of epsilon15 using Zernike phase contrast microscopy
Method: subtomogram averaging / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-5204:
Average of 50 Epsilon15 subtomograms using electron cryo-tomography
Method: subtomogram averaging / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-5206:
Epsilon15 icosahedral reconstruction using Zernike phase contrast electron microscopy
Method: single particle / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-5207:
Epsilon15 asymmetric reconstruction using Zernike phase contrast electron microscopy
Method: single particle / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-5208:
Epsilon15 asymmetric reconstruction using Zernike phase contrast electron microscopy (100 particles)
Method: single particle / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-5209:
Epsilon15 asymmetric reconstruction using conventional cryo-EM
Method: single particle / : Murata K, Liu X, Danev R, Jakana J, Schmid MF, King J, Nagayama K, Chiu W

EMDB-1707:
Structural Changes in a Marine Podovirus Associated with Viral Genome Release into Prochlorococcus
Method: subtomogram averaging / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

PDB-2xd8:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1714:
Asymmetric structure of the empty Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1715:
Asymmetric structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1713:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1557:
Cryo-EM density map of Epsilon-15 bacteriophage icosahedral reconstruction from JADAS automatically acquired data at 7.3 Angstrom resolution.
Method: single particle / : Zhang J, Nakamura N, Shimizu Y, Liang N, Liu X, Jakana J, Marsh MP, Booth CR, Shinkawa T, Nakata M, Chiu W

EMDB-1375:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.
Method: single particle / : Liu X, Jiang W, Jakana J, Chiu W

EMDB-1376:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.
Method: single particle / : Liu X, Jiang W, Jakana J, Chiu W

EMDB-1377:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.
Method: single particle / : Liu X, Jiang W, Jakana J, Chiu W

EMDB-1378:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.
Method: single particle / : Liu X, Jiang W, Jakana J, Chiu W

EMDB-1379:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.
Method: single particle / : Liu X, Jiang W, Jakana J, Chiu W

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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