[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 68 items for (author: xiang, & y.)

PDB-8jww:
top segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-8jwx:
bottom segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-8j1t:
Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab
Method: single particle / : Xiang Y, Li R

PDB-8j1v:
Cryo-EM structure of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs
Method: single particle / : Xiang Y, Li R

PDB-8ixk:
bottom segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-8ixl:
top segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-8ixj:
Middle segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-8jwt:
Asymmetric middle segment of the bacteriophage M13 mini variant
Method: single particle / : Xiang Y, Jia Q

PDB-7y5s:
CryoEM structure of Klebsiella phage Kp7 type I tail fiber gp51 in vitro
Method: single particle / : Huang L, Xiang Y

PDB-7y1c:
CryoEM structure of Klebsiella phage Kp9 tail complex applied with C6 symmetry
Method: single particle / : Huang L, Xiang Y

PDB-7y22:
CryoEM structure of Klebsiella phage Kp7 tail complex applied with C6 symmetry
Method: single particle / : Huang L, Xiang Y

PDB-7y23:
CryoEM structure of Klebsiella phage Kp9 icosahedral head
Method: single particle / : Huang L, Xiang Y

PDB-7y3t:
CryoEM structure of Klebsiella phage Kp7 icosahedral head
Method: single particle / : Huang L, Xiang Y

PDB-7xy1:
Cryo-EM structure of Klebsiella phage Kp9 type I tail fiber gp42 in vitro
Method: single particle / : Huang L, Xiang Y

PDB-7xyc:
CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 in vitro
Method: single particle / : Huang L, Xiang Y

PDB-8igg:
C2 reconstruction of the concave tetramer in the cube-like assembly of 201Phi2-1 gp105
Method: single particle / : Liu Z, Xiang Y

PDB-8ihp:
Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Method: single particle / : Cao D, Ma B, Cao Z, Zhang X, Xiang Y

PDB-7w68:
human single hexameric Mcm2-7 complex
Method: single particle / : Xu NN, Lin QP, Liu CD, Tian HL, Xiang Y, Zhu G

PDB-7v7b:
CryoEM structure of DDB1-VprBP complex in ARM-up conformation
Method: single particle / : Wang D, Xu J, Liu Q, Xiang Y

PDB-7v7c:
CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex
Method: single particle / : Wang D, Xu J, Liu Q, Xiang Y

PDB-7wcd:
Cryo EM structure of SARS-CoV-2 spike in complex with TAU-2212 mAbs in conformation 4
Method: single particle / : Xiang Y, Ma B, Li R

PDB-7y42:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid
Method: single particle / : Xiang Y, Wang L

PDB-7u0z:
High-resolution map of tau filament from progressive supranuclear palsy (PSP) case 1
Method: helical / : FItzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u10:
TMEM106B(120-254) protofilament from progressive supranuclear palsy (PSP) case 2
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u11:
TMEM106B(120-254) protofilament from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (case 1)
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u12:
TMEM106B(120-254) singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (case 2)
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u13:
TMEM106B(120-254) singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (case 4)
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u14:
TMEM106B(120-254) singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type C (case 8)
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u15:
TMEM106B(120-254) singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type B case 2 (case 7).
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u16:
TMEM106B(120-254) protofilament from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (all cases combined).
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u17:
TMEM106B(120-254) T185S singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type B case 2 (case 7).
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7u18:
TMEM106B(120-254) T185S protofilament from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (all cases combined).
Method: helical / : Fitzpatrick AWP, Stowell MHB, Chang A, Xiang X, Wang J, Lee C, Arakhamia T, Simjanoska M, Wang C, Carlomagno Y, Zhang G, Dhingra S, Thierry M, Perneel J, Heeman B, Forgrave LM, DeTure M, DeMarco ML, Cook CN, Rademakers R, Dickson D, Petrucelli L, Mackenzie IRA

PDB-7ffe:
Cryo-EM structure of VEEV VLP
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7fff:
Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7ffl:
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7ffn:
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7ffo:
Cryo-EM structure of VEEV VLP at the 5-fold axes
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7ffq:
Cryo-EM structure of VEEV VLP at the 2-fold axes
Method: single particle / : Zhang X, Xiang Y, Ma J, Ma B, Huang C

PDB-7k37:
Structure of full-length influenza HA with a head-binding antibody at pH 7.8
Method: single particle / : Gui M, Xiang Y, Gao J

PDB-7k39:
Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation A, neutral pH-like
Method: single particle / : Gui M, Gao J, Xiang Y

PDB-7k3a:
Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation B, fusion peptide release
Method: single particle / : Gui M, Gao J, Xiang Y

PDB-7k3b:
Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation C, central helices splay
Method: single particle / : Gui M, Gao J, Xiang Y

PDB-6qus:
HsCKK (human CAMSAP1) decorated 13pf taxol-GDP microtubule
Method: single particle / : Atherton JM, Luo Y, Xiang S, Yang C, Jiang K, Stangier M, Vemu A, Cook A, Wang S, Roll-Mecak A, Steinmetz MO, Akhmanova A, Baldus M, Moores CA

PDB-6quy:
NgCKK (N.Gruberi CKK) decorated 13pf taxol-GDP microtubule
Method: single particle / : Atherton JM, Luo Y, Xiang S, Yang C, Jiang K, Stangier M, Vemu A, Cook A, Wang S, Roll-Mecak A, Steinmetz MO, Akhmanova A, Baldus M, Moores CA

PDB-6qve:
NgCKK (Naegleria Gruberi CKK) decorated 14pf taxol-GDP microtubule
Method: single particle / : Atherton JM, Luo Y, Xiang S, Yang C, Jiang K, Stangier M, Vemu A, Cook A, Wang S, Roll-Mecak A, Steinmetz MO, Akhmanova A, Baldus M, Moores CA

PDB-6qvj:
HsCKK (human CAMSAP1) decorated 14pf taxol-GDP microtubule
Method: single particle / : Atherton JM, Luo Y, Xiang S, Yang C, Jiang K, Stangier M, Vemu A, Cook A, Wang S, Roll-Mecak A, Steinmetz MO, Akhmanova A, Baldus M, Moores CA

PDB-6ku9:
Structure of the African swine fever virus major capsid protein p72
Method: single particle / : Liu Q, Xiang Y

PDB-6qvk:
The cryo-EM structure of bacteriophage phi29 prohead
Method: single particle / : Xu J, Gui M, Xiang Y

PDB-6qx7:
The cryo-EM structure of connector in bacteriophage phi29 prohead
Method: single particle / : Xu J, Gui M, Xiang Y

PDB-6qyd:
Cryo-EM structure of the head in mature bacteriophage phi29
Method: single particle / : Xu JW, Wang DH, Gui M, Xiang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more