[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 640 items for (author: way & m)

EMDB-41672:
ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

EMDB-41673:
ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8twv:
ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8twz:
ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

EMDB-42286:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42355:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42382:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42390:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ui2:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ukm:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8umr:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8un1:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-40665:
Puromycin reveals a distinct conformation of neuronal ribosomes.
Method: single particle / : Anadolu M, Sun J, Tian-Yi-Li J, Graber T, Ortega J, Sossin WS

EMDB-40666:
Class2 80S with PP tRNA
Method: single particle / : Anadolu M, Sun J, Tian-Yi-Li J, Graber T, Ortega J, Sossin WS

EMDB-40667:
Class3 80S with broken density in P site
Method: single particle / : Anadolu M, Sun J, Tian-Yi-Li J, Graber T, Ortega J, Sossin WS

EMDB-40668:
Class4 80S with only 60S
Method: single particle / : Ortega J

EMDB-43542:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

PDB-8vuw:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

PDB-8t1n:
Micro-ED Structure of a Novel Domain of Unknown Function Solved with AlphaFold
Method: electron crystallography / : Miller JE, Cascio D, Sawaya MR, Cannon KA, Rodriguez JA, Yeates TO

EMDB-17557:
Cryo-EM structure of cortactin-stabilized Arp2/3-complex nucleated actin branches-Local refined map on mother filament
Method: single particle / : Liu T, Moores CA

EMDB-18916:
Cryotomogram of mature Vaccinia virus (WR) virion
Method: electron tomography / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-18917:
Subtomogram average of the Vaccinia virus (WR) portal complex in mature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-18918:
Subtomogram average of the Vaccinia virus (WR) A4/A10 palisade trimer in mature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

PDB-8r5i:
In situ structure of the Vaccinia virus (WR) A4/A10 palisade trimer in mature virions by flexible fitting into a cryoET map
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-17553:
Cryo-EM structure of cortactin-stabilized Arp2/3 complex nucleated actin branches-Daughter filament consensus map
Method: single particle / : Liu T, Moores CA

EMDB-17554:
Cryo-EM structure of cortactin-stabilized Arp2/3 nucleated actin branches-Local refined map on Arp2/3 complex
Method: single particle / : Liu T, Moores CA

EMDB-17555:
Cryo-EM structure of cortactin-stabilized Arp2/3-complex nucleated actin branches-Local refined map on the daughter filament and cortactin density
Method: single particle / : Liu T, Moores CA

EMDB-17556:
Cryo-EM structure of cortactin-stabilized Arp2/3-complex nucleated actin branches-Local refined map on capping protein
Method: single particle / : Liu T, Moores CA

EMDB-17558:
Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches
Method: single particle / : Liu T, Moores CA

PDB-8p94:
Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches
Method: single particle / : Liu T, Moores CA

EMDB-41195:
Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) G269V mutant, amyloid fiber
Method: helical / : Rosenberg GM, Sawaya MR, Boyer DR, Ge P, Abskharon R, Eisenberg DS

EMDB-41198:
Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) P285L mutant, amyloid fiber
Method: helical / : Rosenberg GM, Sawaya MR, Boyer DR, Ge P, Abskharon R, Eisenberg DS

PDB-8teq:
Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) G269V mutant, amyloid fiber
Method: helical / : Rosenberg GM, Sawaya MR, Boyer DR, Ge P, Abskharon R, Eisenberg DS

PDB-8ter:
Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) P285L mutant, amyloid fiber
Method: helical / : Rosenberg GM, Sawaya MR, Boyer DR, Ge P, Abskharon R, Eisenberg DS

EMDB-41171:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

EMDB-41172:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdn:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdo:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

EMDB-42181:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42381:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8uf0:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ump:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-28829:
ELIC with Propylamine in SMA nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

EMDB-28830:
ELIC with Propylamine in saposin nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

EMDB-28831:
ELIC with Propylamine in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

EMDB-28832:
Apo ELIC in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8f32:
ELIC with Propylamine in SMA nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8f33:
ELIC with Propylamine in saposin nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8f34:
ELIC with Propylamine in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

PDB-8f35:
Apo ELIC in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Method: single particle / : Dalal V, Arcario MJ, Petroff II JT, Deitzen NM, Tan BK, Brannigan G, Cheng WWL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more