[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 17 items for (author: vanderlinden & r)

PDB-5l9t:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5l9u:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5khu:
Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution
Method: single particle / : Yamaguchi M, VanderLinden R, Dube P, Stark H, Schulman B

PDB-5khr:
Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)
Method: single particle / : VanderLinden R, Yamaguchi M, Dube P, Haselbach D, Stark H, Schulman BA

EMDB-4021:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant with Mitotic Checkpoint Complex (MCC) in a closed conformation.
Method: single particle / : Stark H, Schulman B, Peters JM

EMDB-4022:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant with Mitotic Checkpoint Complex (MCC) in an open conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4023:
Human Anaphase-Promoting Complex/Cyclosome bound to Mitotic Checkpoint Complex (APC/C-MCC) in a closed conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4024:
Human Anaphase-promoting complex/Cyclosome bound to Mitotic Checkpoint Complex(APC/C-MCC) in an open conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4025:
Human Anaphase-promoting complex/Cyclosome (APC/C) APC15 deletion mutant bound to the E2 UBE2C (aka UBCH10) poised for ubiquitin ligation to substrate.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4026:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant bound to Mitotic Checkpoint Complex (MCC) and the E2 UBE2S poised for UB chain synthesis.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4027:
Human Anaphase-Promoting Complex/Cyclosome bound to Mitotic Checkpoint Complex (APC/C-MCC) and the E2 UBE2C (aka UBCH10) poised for ubiquitination of MCC's CDC20
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4028:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant bound to Mitotic Checkpoint Complex (MCC) and the E2 UBE2C (aka UBCH10) poised for ubiquitination of MCC's CDC20
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-3432:
Anaphase-promoting complex/Cyclosome (APC/C)-CDH1-UBE2C (aka UBCH10)-substrate-Ubiquitin (variant)
Method: single particle / : Brown N, VanderLinden R, Watson E, Weissmann F, Ordureau A, Wu KP, Yu S, Mercedi P, Harrison J, Davidson I, Coudevylle R, Lu Y, Dube P, Brunner M, Grace CRR, Miller D, Haselbach D, Jarvis M, Yamaguchi M, Yanishevski D, Petzold G, Sidhu S, Kuhlman B, Kirschner M, Harper JW, Peters JM, Stark H, Schulman BA

EMDB-3433:
Anaphase-promoting complex/Cyclosome (APC/C)-CDH1-UBE2S-Ubiquitin (variant)-substrate
Method: single particle / : Brown N, VanderLinden R, Watson E, Weissmann F, Ordureau A, Wu KP, Yu S, Mercedi P, Harrison J, Davidson I, Coudevylle R, Lu Y, Dube P, Brunner M, Grace CRR, Miller D, Haselbach D, Jarvis M, Yamaguchi M, Yanishevski D, Petzold G, Sidhu S, Kuhlman B, Kirschner M, Harper JW, Peters JM, Stark H, Schulman BA

EMDB-2929:
Mechanism of Ubiquitin Ligation to a Substrate by human Anaphase-Promoting Complex
Method: single particle / : Brown N, VanderLinden R, Watson E, Qiao R, Grace CR, Yamaguchi M, Weissmann F, Frye J, Dube P, Cho SE, Actis M, Rodrigues P, Fujii N, Peters JM, Schulman BA, Stark H

EMDB-2775:
Mechanism of polyubiquitination by human Anaphase Promoting Complex: RING repurposing for ubiquitin chain assembly
Method: single particle / : Brown NG, Watson ER, Weissmann F, Jarvis MA, Vanderlinden R, Grace CRR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng J, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA

EMDB-6084:
Anaphase Promoting Complex with bound Ube2S
Method: single particle / : Brown NG, Watson ER, Weissmann F, Jarvis MA, Vanderlinden R, Grace CRR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng J, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more