[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 808 items for (author: uji & m)

EMDB-41434:
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41435:
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41436:
Central rod disk in D3 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41463:
Synechocystis PCC 6803 Phycobilisome quenched by OCP, high resolution
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-41475:
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-41585:
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8to2:
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8to5:
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8tpj:
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8tro:
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-37104:
96-nm axonemal repeat with RS1/2/3
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37111:
48-nm repeat DMT
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37114:
Radial Spoke 1 (RS1)
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37116:
RS1 refined with head mask
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37117:
Radial Spoke 2 (RS2)
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37118:
Radial Spoke 2 (RS2) head
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37119:
Radial Spoke 3
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37120:
Radial Spoke 3 head
Method: subtomogram averaging / : Cong X, Yao C

EMDB-18534:
Structure of SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

EMDB-18590:
Cryo-EM map of rotated SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

PDB-8qoa:
Structure of SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

EMDB-18320:
E. coli ApdP-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18332:
B. subtilis ApdA-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18340:
ApdP-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

EMDB-18341:
ApdA-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

PDB-8qbt:
E. coli ApdP-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

PDB-8qcq:
B. subtilis ApdA-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-35832:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365
Method: single particle / : Jia GW, Wang X, Zhang CB, Dong HH, Su ZM

PDB-8iyx:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365
Method: single particle / : Jia GW, Wang X, Zhang CB, Dong HH, Su ZM

EMDB-35634:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35635:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35636:
Wheat 40S ribosome in complex with a tRNAi and eIF2
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35637:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35638:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip8:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip9:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipa:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipb:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-37949:
RS head-neck monomer
Method: single particle / : Meng X, Cong Y

EMDB-38003:
The consensus map of RS head-neck dimer
Method: single particle / : Meng X, Cong Y

EMDB-38004:
consensus map of RS head-neck monomer complex
Method: single particle / : Meng X, Cong Y

EMDB-38013:
Rsph16-Rsph16' bridge region of Radial spoke head-neck dimer
Method: single particle / : Meng X, Cong Y

EMDB-38014:
Radial spoke head-neck dimer's monomer-half focuses-refinement map
Method: single particle / : Meng X, Cong Y

EMDB-38019:
RS head-neck dimer's neck focused-refinement map
Method: single particle / : Meng X, Cong Y

EMDB-38020:
Radial spoke head-neck dimer
Method: single particle / : Meng X, Cong Y

EMDB-38028:
Radial spoke head-neck complex, focus-refinement on core
Method: single particle / : Meng X, Cong Y

EMDB-38029:
Focus-refinement on RS head-neck monomer's arm 1
Method: single particle / : Meng X, Cong Y

EMDB-38030:
Focus-refinement on RS head-neck monomer's arm 2
Method: single particle / : Meng X, Cong Y

EMDB-38031:
Focus-refinement on RS head-neck monomer's neck
Method: single particle / : Meng X, Cong Y

PDB-8wzb:
RS head-neck monomer
Method: single particle / : Meng X, Cong Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more