[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,134 items for (author: thomas & ja)

EMDB-16903:
60S ribosomal subunit bound to the E3-UFM1 complex (native, UFM1 pulldown)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-16880:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-16902:
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-16905:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
Method: single particle / : Penchev I, DaRosa PA, Peter JJ, Kulathu Y, Becker T, Beckmann R, Kopito R

EMDB-16908:
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-15525:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

PDB-8amf:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

EMDB-43222:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Method: single particle / : Sun C, Jiang W

EMDB-43292:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Method: single particle / : Sun C, Jiang W

EMDB-43293:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
Method: single particle / : Sun C, Jiang W

PDB-8vgr:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Method: single particle / : Sun C, Jiang W

PDB-8vjr:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Method: single particle / : Sun C, Jiang W

PDB-8vjs:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
Method: single particle / : Sun C, Jiang W

EMDB-43542:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

PDB-8vuw:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-16424:
F-actin decorated by SipA497-669
Method: helical / : Yuan B, Wald J, Marlovits TC

EMDB-16425:
F-actin decorated by SipA426-685
Method: helical / : Yuan B, Wald J, Marlovits TC

PDB-8c4c:
F-actin decorated by SipA497-669
Method: helical / : Yuan B, Wald J, Marlovits TC

PDB-8c4e:
F-actin decorated by SipA426-685
Method: helical / : Yuan B, Wald J, Marlovits TC

EMDB-40856:
Single particle reconstruction of the human LINE-1 ORF2p without substrate (apo)
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40858:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40859:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxt:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxu:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-16805:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-16807:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8cr9:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8crb:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-42124:
Cryo-EM structure of human STEAP1 in complex with AMG 509 Fab
Method: single particle / : Li F, Bailis JM

PDB-8ucd:
Cryo-EM structure of human STEAP1 in complex with AMG 509 Fab
Method: single particle / : Li F, Bailis JM, Zhang H

EMDB-41617:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M, Sun M

PDB-8tu6:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M

EMDB-41667:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41668:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8twe:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8twi:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-29281:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-29282:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flk:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flm:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-40644:
Cryo-EM structure of the PP2A:B55-FAM122A complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41604:
Cryo-EM structure of the PP2A:B55-ARPP19 complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8so0:
Cryo-EM structure of the PP2A:B55-FAM122A complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8ttb:
Cryo-EM structure of the PP2A:B55-ARPP19 complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more