[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 31 items for (author: thomas & gj)

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-27654:
A subtomogram average of H. neapolitanus Rubisco within alpha-carboxysomes
Method: subtomogram averaging / : Metskas LA, Blikstad C, Laughlin T, Savage DF, Jensen GJ

EMDB-25824:
aRML prion fibril
Method: single particle / : Hoyt F, Standke HG, Artikis E, Caughey B, Kraus A

EMDB-11928:
SctV (SsaV) cytoplasmic domain
Method: single particle / : Matthews-Palmer TRS, Gonzalez-Rodriguez N, Calcraft T, Lagercrantz S, Zachs T, Yu XJ, Grabe G, Holden D, Nans A, Rosenthal P, Rouse S, Beeby M

EMDB-22975:
Lethocerus Myosin II complete coiled-coil domain resolved in its native environment
Method: single particle / : Rahmani H, Hu Z, Daneshparvar N, Taylor D, Taylor KA

PDB-7kog:
Lethocerus Myosin II complete coiled-coil domain resolved in its native environment
Method: single particle / : Rahmani H, Hu Z, Daneshparvar N, Taylor D, Taylor KA

PDB-7beq:
MicroED structure of the MyD88 TIR domain higher-order assembly
Method: electron crystallography / : Clabbers MTB, Holmes S, Muusse TW, Vajjhala P, Thygesen SJ, Malde AK, Hunter DJB, Croll TI, Nanson JD, Rahaman MH, Aquila A, Hunter MS, Liang M, Yoon CH, Zhao J, Zatsepin NA, Abbey B, Sierecki E, Gambin Y, Darmanin C, Kobe B, Xu H, Ve T

EMDB-20926:
Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation
Method: single particle / : Xu X, Pozharski E

EMDB-20927:
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation
Method: single particle / : Xu X, Pozharski E

PDB-6uwr:
Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation
Method: single particle / : Xu X, Pozharski E, des Georges A

PDB-6uwt:
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation
Method: single particle / : Xu X, Pozharski E, des Georges A

EMDB-0436:
Near-atomic structure of icosahedrally averaged PBCV-1 capsid
Method: single particle / : Fang Q, Rossmann MG

PDB-6ncl:
Near-atomic structure of icosahedrally averaged PBCV-1 capsid
Method: single particle / : Fang Q, Rossmann MG

EMDB-9004:
Cryo-EM structure of C. elegans GDP-microtubule
Method: single particle / : Chaaban S, Jariwala S

EMDB-7459:
Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

EMDB-7460:
Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

PDB-6cde:
Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Liu K, Carragher B, Potter CS, Kwong PD

PDB-6cdi:
Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Liu K, Carragher B, Potter CS, Kwong PD

EMDB-8420:
Cryo-EM structure of BG505 DS-SOSIP HIV-1 Env trimer in complex with vaccine elicited, fusion peptide-directed antibody vFP1.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-8421:
Cryo-EM structure of an asymmetric complex of BG505 DS-SOSIP HIV-1 Env trimer with vaccine elicited, fusion peptide-directed antibody vFP5.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-8422:
Cryo-EM structure of an asymmetric complex of BG505 DS-SOSIP HIV-1 Env trimer with vaccine elicited, fusion peptide-directed antibody vFP5.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-2170:
Thermococcus kodakaraensis 70S ribosome
Method: single particle / : Armache JP, Anger AM, Marquez V, Frankenberg S, Froehlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN

EMDB-2171:
Staphylothermus marinus 50S ribosomal subunit
Method: single particle / : Armache JP, Anger AM, Marquez V, Frankenberg S, Froehlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN

EMDB-2172:
Methanococcus igneus 70S ribosome
Method: single particle / : Armache JP, Anger AM, Marquez V, Frankenberg S, Froehlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN

EMDB-1796:
Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins
Method: single particle / : Marquez V, Froehlich T, Armache JP, Sohmen D, Doenhoefer A, Berninghausen O, Thomm M, Beckmann R, Arnold GJ, Wilson DN

EMDB-1797:
Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins. 50S ribosomal subunit of Sulfolobus acidocaldarius
Method: single particle / : Marquez V, Froehlich T, Armache JP, Sohmen D, Doenhoefer A, Berninghausen O, Thomm M, Beckmann R, Arnold GJ, Wilson DN

EMDB-1240:
The structure of a filamentous bacteriophage.
Method: helical / : Wang YA, Yu X, Overman S, Tsuboi M, Thomas GJ, Egelman EH

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more