[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,504 items for (author: thomas & g)

EMDB-16903:
60S ribosomal subunit bound to the E3-UFM1 complex (native, UFM1 pulldown)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-18381:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Zeqiraj E, Kulathu Y

EMDB-18382:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Kulathu Y, Zeqiraj E

PDB-8qfc:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Zeqiraj E, Kulathu Y

PDB-8qfd:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Kulathu Y, Zeqiraj E

EMDB-16880:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-16902:
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-16905:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
Method: single particle / : Penchev I, DaRosa PA, Peter JJ, Kulathu Y, Becker T, Beckmann R, Kopito R

EMDB-16908:
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

PDB-8ohd:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

PDB-8oj0:
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

PDB-8oj5:
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
Method: single particle / : Penchev I, DaRosa PA, Peter JJ, Kulathu Y, Becker T, Beckmann R, Kopito R

PDB-8oj8:
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Method: single particle / : Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R

EMDB-18182:
Closed conformation of the g-tubulin ring complex nucleating microtubules
Method: single particle / : Llorca O, Serna M

EMDB-15525:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

PDB-8amf:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

EMDB-18181:
Early closed conformation of the g-tubulin ring complex
Method: single particle / : Llorca O, Serna M, Fernandez-Leiro R

PDB-8q62:
Early closed conformation of the g-tubulin ring complex
Method: single particle / : Llorca O, Serna M, Fernandez-Leiro R

EMDB-43222:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Method: single particle / : Sun C, Jiang W

EMDB-43292:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Method: single particle / : Sun C, Jiang W

EMDB-43293:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
Method: single particle / : Sun C, Jiang W

PDB-8vgr:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Method: single particle / : Sun C, Jiang W

PDB-8vjr:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Method: single particle / : Sun C, Jiang W

PDB-8vjs:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
Method: single particle / : Sun C, Jiang W

EMDB-43542:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

PDB-8vuw:
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Method: single particle / : Petroff II JT, Deng Z, Rau MJ, Fitzpatrick JAJ, Yuan P, Cheng WWL

EMDB-42787:
Arp2/3 branch junction complex, ADP state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42788:
Arp2/3 branch junction complex, BeFx state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42829:
Straight actin filament from Arp2/3 branch junction sample (ADP)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42830:
Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uxw:
Arp2/3 branch junction complex, ADP state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uxx:
Arp2/3 branch junction complex, BeFx state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uz0:
Straight actin filament from Arp2/3 branch junction sample (ADP)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uz1:
Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42600:
Murine norovirus in the presence of 1mM calcium
Method: single particle / : Smith TJ

EMDB-42604:
Murine norovirus + 1 mM MgCl2
Method: single particle / : Smith TJ

EMDB-42623:
Murine norovirus dialyzed against EDTA
Method: single particle / : Smith TJ

PDB-8uux:
Murine norovirus capsid protein in the presence of 1mM calcium
Method: single particle / : Smith TJ

PDB-8uv3:
Murine norovirus capsid protein + 1 mM MgCl2
Method: single particle / : Smith TJ

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-16424:
F-actin decorated by SipA497-669
Method: helical / : Yuan B, Wald J, Marlovits TC

EMDB-16425:
F-actin decorated by SipA426-685
Method: helical / : Yuan B, Wald J, Marlovits TC

PDB-8c4c:
F-actin decorated by SipA497-669
Method: helical / : Yuan B, Wald J, Marlovits TC

PDB-8c4e:
F-actin decorated by SipA426-685
Method: helical / : Yuan B, Wald J, Marlovits TC

EMDB-18916:
Cryotomogram of mature Vaccinia virus (WR) virion
Method: electron tomography / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

EMDB-18917:
Subtomogram average of the Vaccinia virus (WR) portal complex in mature virions
Method: subtomogram averaging / : Calcraft T, Hernandez-Gonzalez M, Nans A, Rosenthal PB, Way M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more